Gene detail

Detail information of GWHGAAZE002547

Functional Annotation

Database	Orthologs	Annotation
Nr	ACM43505.1	polyphenoloxidase [Camellia nitidissima]
Swissprot	tr\|P43309\|PPO_MALDO	Polyphenol oxidase, chloroplastic (Precursor)
trEMBL	tr\|B9VS06\|B9VS06_9ERIC	Polyphenoloxidase {ECO:0000313\|EMBL:ACM43505.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	81054214	81055977	+
GWHAAZE00000001	mRNA	81054214	81055977	+
GWHAAZE00000001	exon	81054214	81055531	+
GWHAAZE00000001	exon	81055562	81055977	+
GWHAAZE00000001	CDS	81054214	81055531	+
GWHAAZE00000001	CDS	81055562	81055977	+

Transcript Sequence
>GWHTAAZE002551 ATGGCTCTTAAAGTTCCAACGGCCACTAACTCCACCACCACCCCCAATGCCTACTTTTCCTCCTCCTTGTATTCTCGCTCCTTAATTTCTAAGCCCTTCAAAGTTTTCATAAATGGAAAGCCTCACCATGCCTTCAAAGTTTCATGCAAATCCACAGATGATGAAAACAATGAACAAACTTCTTCAAGCAAGTTTGATAGGAGGAATGTGATTCTTGGCCTAGGTGGTCTTTATGGCGCGGCCAACCTGAGCGTCAACCACCTGGCAGTTGCCGCACCTGTGGCCGCACCAGATGTGTCAAAATGCGGTCCCGCGGAGTTATCTGACGGAACCGTCATAAGCTCCGATTGTTGTCCCCCATCGGCCACAAAAATCTCCGATTTCAAATTTCCCCCGCCCTCGAAAATGCGTGTTAGACCAGCAGCTCATTTGGCCAATGACGAGTACGTGGCCAAGTTCTCGAAGGCGATTGAGCTCATGAAGGCCTTACCCGAGGATGACCCTCGTAACTTCTTGCAACAGGCCAGGGTTCACTGCGCATATTGCAATGGCGCGTACCAACAAGTTGGTTTCCCGGACCTCGACCTCCAGGTCCACAACTCGTGGCTCTTTTTCCCATTTCACCGTTGGTACTTGTACTTCTATGAGAGGATCTTGGGGAAACTAATCGACGATCCTTCTTTCGCGTTACCGTTTTGGAACTGGGACACGCCACGTGGCATGAAGATACCGTCCATGTTCCTCAATACCTCGTCCTCCCTTTACAATGAAAAACGAAATACGAGCCATTTGTCAGTGGTGCTTGACCTCGGTTACAACGGTACGGATTCCGATGCATCCGATCTGGACAAAATTACTAATAATCTTGCAATTATGTACCGGCAAATGGTCCCTAATGCCAGCACTCCCGAACTGTTCTTTGGAAGTGAGTACCGTGCAGGGGATAAACCTAGTCCCGGCGCAGGGTCCATAGAGACCACCCCCCACATTGCCCTCCACAGGTTTGTGGGGGATCCAAGGCAGCCCAACGGGGAGGACTTGGGCAACTTCTACTCCGCCGGTAGAGACACCCTCTTTTACTGCCACCACGGAAACGTTGACCGAATGTGGACCATATGGAAAAATCTCGGGGGCAAGCGAAAAGACATATCAGACCCCGATTGGCTAAAATCTTCGTTCCTCTTCTATGACGAGAACGCGCAGCTCGTGCGTGTCAAAGTCGGGGACTGTGTTGACAACAAGAAAATGGGATATGTGTACCAGAACGTGGCGATCCCCTGGCTGCAGAGCAAGCCAGTACCACGCTTGAAGAAATCTGGACCAGCGACAAGTGTCGTTTTCCCGGTGGCGCTCGACAATGTTGTCAAGGTGCTTGTCCCAAGGCCGAAGCGATCGAGGAGTAAGAAGCAAAAGGAGGCCGAGGAAGAGGTACTTGTGATTGAGGGGATCAAGTATGACCGCGAGAAGTACGTGAAGTTCGATGTTTTTGTGAACGACGAGGATGACGAGGAGAGCGCGGCAGCTGACAAGACGGAGTTTGCGGGGAGTTTTGTGAGCTTGCCGCATAATCATAAGCACGGGAAGAAGGGGACTACTAATTTGAAACTGGGATTGACTGAATTGTTGGAGGAATTGGAAGCTGAAGATGATGAGAACGTGCTGGTTACTTTGGTACCAAAATCTGGAACTGATGATGTTACTATTTCTGGGATTAAGATTGAGTTTTCTTCTTAA

Network for GWHGAAZE002547

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00264.21	Tyrosinase	169	375	4.40E-31
PF12142.9	PPO1_DWL	382	432	6.20E-25
PF12143.9	PPO1_KFDV	447	575	5.40E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00422	E1.10.3.1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0046148	biological_process	pigment biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0004097	molecular_function	catechol oxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	811.952
	SRR3591706	second leaf	276.294
	SRR3591707	mature leaf	73.516
	SRR3591708	Shoot apex	1785.989
	SRR3591709	Stem	56.039
	SRR3591710	White floral bud	898.766
	SRR3591711	White flower	919.259
	SRR3591712	Green floral bud	413.395
	SRR3591713	Yellow flower	127.876
SRP173429	SRR8316895	Juvenile bud stage	1169.452
	SRR8316896	Juvenile bud stage	737.837
	SRR8316897	Juvenile bud stage	418.652
	SRR8316894	Third green stage	220.348
	SRR8316900	Third green stage	291.153
	SRR8316901	Third green stage	501.071
	SRR8316898	Complete white stage	136.300
	SRR8316899	Complete white stage	213.800
	SRR8316903	Complete white stage	366.484
	SRR8316902	Silver flowering stage	59.401
	SRR8316904	Silver flowering stage	96.474
	SRR8316905	Silver flowering stage	40.555
	SRR8316906	Gold flowering stage	56.091
	SRR8316907	Gold flowering stage	112.846
	SRR8316908	Gold flowering stage	116.256
SRP132670	SRR6706286	Control	192.624
	SRR6706287	Light intensity 50%	201.693
	SRR6706288	Light intensity 20%	156.063
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	504.801
	CNS0095593	Slightly white alabastrum(diploid) 2	199.923
	CNS0095594	Slightly white alabastrum(diploid) 3	385.473
	CNS0095595	Whole white alabastrum(diploid) 2	128.723
	CNS0095596	Whole white alabastrum(diploid) 3	60.028
	CNS0095597	Whole white alabastrum(diploid) 4	96.659
	CNS0095598	Silvery flower (diploied) 1	2461.534
	CNS0095599	Silvery flower (diploied) 2	1193.322
	CNS0095600	Silvery flower (diploied) 3	502.347
	CNS0095601	Golden flower (diploid) 1	663.651
	CNS0095602	Golden flower (diploid) 2	645.251
	CNS0095603	Golden flower (diploid) 3	618.112
	CNS0095604	Slightly white alabastrum(tetraploid) 1	131.083
	CNS0095605	Slightly white alabastrum(tetraploid) 2	111.287
	CNS0095606	Slightly white alabastrum(tetraploid) 3	492.003
	CNS0095607	Whole white alabastrum(tetraploid) 1	137.330
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.446
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.133
	CNS0095610	Silvery flower (tetraploid) 1	141.773
	CNS0095611	Silvery flower (tetraploid) 2	197.461
	CNS0095612	Silvery flower (tetraploid) 3	200.747
	CNS0095613	Golden flower (tetraploid) 1	24.857
	CNS0095614	Golden flower (tetraploid) 2	80.473
	CNS0095615	Golden flower (tetraploid) 3	18.361
CRA001975	CRR073297	Stem 1	2549.753
	CRR073298	Stem 2	2409.286
	CRR073299	Stem 3	4314.113
	CRR073300	Leaf 1	327.308
	CRR073301	Leaf 2	265.841
	CRR073302	Leaf 3	412.486
	CRR073303	Juvenile bud 1	184.536
	CRR073304	Juvenile bud 2	471.840
	CRR073305	Juvenile bud 3	184.616
	CRR073306	Third green 1	126.254
	CRR073307	Third green 2	158.403
	CRR073308	Third green 3	250.770
	CRR073309	Second white 1	38.691
	CRR073310	Second white 2	21.925
	CRR073311	Second white 3	14.775
	CRR073312	Silver flowering 1	50.313
	CRR073313	Silver flowering 2	60.848
	CRR073314	Silver flowering 3	46.299
	CRR073315	Gold flowering 1	27.496
	CRR073316	Gold flowering 2	106.674
	CRR073317	Gold flowering 3	141.122
	CRR073318	Tawny withering 1	221.601
	CRR073319	Tawny withering 2	455.457
	CRR073320	Tawny withering 3	127.872