Gene detail

Detail information of GWHGAAZE002550

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007025702.1	Uncharacterized protein TCM_029922 [Theobroma cacao]
Swissprot	tr\|P43309\|PPO_MALDO	Polyphenol oxidase, chloroplastic (Precursor)
trEMBL	tr\|A0A061GMJ6\|A0A061GMJ6_THECC	Uncharacterized protein {ECO:0000313\|EMBL:EOY28324.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	81095991	81097772	+
GWHAAZE00000001	mRNA	81095991	81097772	+
GWHAAZE00000001	exon	81095991	81097284	+
GWHAAZE00000001	exon	81097318	81097772	+
GWHAAZE00000001	CDS	81095991	81097284	+
GWHAAZE00000001	CDS	81097318	81097772	+

Transcript Sequence
>GWHTAAZE002554 ATGGCTTCTCTTCAAGCACCACCACCCACTGTTACTACCCCCACTGCCTATTCTTCCTCCTCTTTGTACTCCCGCTCTTTGTTAGCTAAACCCTCCAAAGTTTTCATTAATGGAAAACATTACCCTAGCTACAATATTTCATGCAAATCCTCAAGCAATGACAATAATAGTAGTGAGGATCAAGCCCCTCAATCTACCAAGTTTGATAGGAGAAACGTTCTCCTTGGCCTAGGTGGCCTCTACGGTGCCGCCGCTAGTTTCAGCGCTTCTAACCTGTCGGCAGTTGCTGCACCGATAGACGCGCCGGTCATAAAAGACTGCGGTTCGGCCGAAATAAGAACAGGCATACCAGTACCGTACACTTGTTGCCCACCGGATGCCGAGATTATTGACTTCCAGTTCCCTCCCTCGGCGTGGTTAAAGCGTACAAGGCCGGCTGCTCACACCGTGAGCAAGGAGTACATTGACAAGTTTAACCGTGCCATTGGGATCATGAAGAACCTTCCGGAAGATGATCCACGCAATTTCTTGAACCAGGCTAAGGTCCATTGCGCTTACTGCAACGGTGCTTATGACCAAGTTGGATTTGGAGATCTAGATCTCCAAATCCACAGCAGTTGGCTCTTTTTTCCGTTCCATCGATGGTACTTGTACTTTTTTGAGCGAATATTAGGAAATTTAATCGGTGATCCCAACTTCGCACTGCCGTACTGGAACTGGGACGCGCCTGCTGGCATGAAAATCCCGCCCATGTACCTCGACGTTAACTCGCAACTCTATGACCAGTTCAGAAATGCCAATCATATACCTATGATTGTTGATCTCAACTACGCTGGTGCTGAGAACACCGACACTGACGAGGCAAGAATAACCAACAACTTGGCAGCAATGTACAAGACAATGTACACTAACGCCACTACTGGGCTTGATTTTTTCGGAGGGGAGTACAGAGCCGGGACCAGTCCAAACCCCAAGCAGGGCTCAATCGAGAGCATTCCCCACACGCCTGTGCACCGGTGGGTGGGTGACCCGGAACAAAGCTATCAAGAGGATATGGGCAACTTCTACTCCGCCGCGAAGGACACTGTGTTCTACGGTCACCACGCTAACGTGGACCGCATGTGGAACATATGGAAAACCCTAGATCCCAACAACAAGGACTTGGCCGATACCGATTGGCTAGATACAACTTTTTTGTTCTACAACGAGGATAAAAAACTCGTACGCGTGAAAGTCCGTGACTCTCTCGATACCGCTAAGCTCGGCTACAGCTACGAGAAGGTCGATATCCCATGGTCCAATGCAGCAGCTAATGCAGCCAACACGGCAGCTGCTAAAGTTGTGTTCCCTGTGAAACTGGATAAGGATGTTAAGGTTTTGGTCTCAAGGCCGAAGAAGGCAAGAAGTAGGAAGGCAAAGGATGAGGCAAGCGAGGTACTTGTGATAGAAGGTATTGATTACGATACTAACAAGTACGTGAAGTTCGACGTGTTCATTAATGATGAGGACATTGATGGAACACACGCTACGCCTGCACAGACGGAATTTGCTGGGAGTTTCACGAACTTGCCACATCATCACAAGCACGGGAAGAGGGCGAAATCTAATATCCACTTCGGATTGACGGATATTCTCGAGGATTTGGAAGCTGAAGATGATGAAAATGTGTTGGTGACTTTGGTGCCCAAGTCTGGTAGCGAGGACATTACAATCAGTGGTATTAAGATCAAGTTTGCTTCGCGAAAGTAA

Network for GWHGAAZE002550

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00264.21	Tyrosinase	174	380	1.70E-32
PF12142.9	PPO1_DWL	387	436	7.80E-23
PF12143.9	PPO1_KFDV	449	578	2.80E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00422	E1.10.3.1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0046148	biological_process	pigment biosynthetic process
GO:0004097	molecular_function	catechol oxidase activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.000
	SRR3591706	second leaf	0.093
	SRR3591707	mature leaf	0.135
	SRR3591708	Shoot apex	2.654
	SRR3591709	Stem	3.436
	SRR3591710	White floral bud	15.452
	SRR3591711	White flower	56.344
	SRR3591712	Green floral bud	2.471
	SRR3591713	Yellow flower	0.217
SRP173429	SRR8316895	Juvenile bud stage	0.117
	SRR8316896	Juvenile bud stage	1.512
	SRR8316897	Juvenile bud stage	0.345
	SRR8316894	Third green stage	0.392
	SRR8316900	Third green stage	3.080
	SRR8316901	Third green stage	3.597
	SRR8316898	Complete white stage	11.508
	SRR8316899	Complete white stage	7.329
	SRR8316903	Complete white stage	11.457
	SRR8316902	Silver flowering stage	0.088
	SRR8316904	Silver flowering stage	2.709
	SRR8316905	Silver flowering stage	0.910
	SRR8316906	Gold flowering stage	0.825
	SRR8316907	Gold flowering stage	2.283
	SRR8316908	Gold flowering stage	4.348
SRP132670	SRR6706286	Control	1.433
	SRR6706287	Light intensity 50%	1.852
	SRR6706288	Light intensity 20%	1.110
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.708
	CNS0095593	Slightly white alabastrum(diploid) 2	1.032
	CNS0095594	Slightly white alabastrum(diploid) 3	0.870
	CNS0095595	Whole white alabastrum(diploid) 2	0.292
	CNS0095596	Whole white alabastrum(diploid) 3	0.728
	CNS0095597	Whole white alabastrum(diploid) 4	0.470
	CNS0095598	Silvery flower (diploied) 1	1.646
	CNS0095599	Silvery flower (diploied) 2	0.969
	CNS0095600	Silvery flower (diploied) 3	0.278
	CNS0095601	Golden flower (diploid) 1	6.192
	CNS0095602	Golden flower (diploid) 2	0.790
	CNS0095603	Golden flower (diploid) 3	1.130
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.937
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.840
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.004
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.263
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.794
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.293
	CNS0095610	Silvery flower (tetraploid) 1	0.590
	CNS0095611	Silvery flower (tetraploid) 2	0.151
	CNS0095612	Silvery flower (tetraploid) 3	0.681
	CNS0095613	Golden flower (tetraploid) 1	0.027
	CNS0095614	Golden flower (tetraploid) 2	0.163
	CNS0095615	Golden flower (tetraploid) 3	0.055
CRA001975	CRR073297	Stem 1	0.781
	CRR073298	Stem 2	1.001
	CRR073299	Stem 3	2.574
	CRR073300	Leaf 1	2.495
	CRR073301	Leaf 2	2.737
	CRR073302	Leaf 3	3.850
	CRR073303	Juvenile bud 1	9.817
	CRR073304	Juvenile bud 2	30.760
	CRR073305	Juvenile bud 3	6.165
	CRR073306	Third green 1	6.755
	CRR073307	Third green 2	9.950
	CRR073308	Third green 3	4.425
	CRR073309	Second white 1	2.902
	CRR073310	Second white 2	0.485
	CRR073311	Second white 3	0.353
	CRR073312	Silver flowering 1	1.327
	CRR073313	Silver flowering 2	1.972
	CRR073314	Silver flowering 3	0.856
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.218
	CRR073318	Tawny withering 1	6.091
	CRR073319	Tawny withering 2	27.750
	CRR073320	Tawny withering 3	2.820