Gene detail

Detail information of GWHGAAZE002551

Functional Annotation

Database	Orthologs	Annotation
Nr	AEL95440.1	polyphenol oxidase [Populus euphratica]
Swissprot	tr\|P43309\|PPO_MALDO	Polyphenol oxidase, chloroplastic (Precursor)
trEMBL	tr\|G0ZAL2\|G0ZAL2_POPEU	Polyphenol oxidase {ECO:0000313\|EMBL:AEL95440.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	81156721	81160338	+
GWHAAZE00000001	mRNA	81156721	81160338	+
GWHAAZE00000001	exon	81156721	81157200	+
GWHAAZE00000001	exon	81157419	81157790	+
GWHAAZE00000001	exon	81159466	81160338	+
GWHAAZE00000001	CDS	81156721	81157200	+
GWHAAZE00000001	CDS	81157419	81157790	+
GWHAAZE00000001	CDS	81159466	81160338	+

Transcript Sequence
>GWHTAAZE002555 ATGGCTTCTTTTCCACCTTCAACAACCACCACCCCCCACTACTACTCCTCCTCCACCATCCCCTCCACCTTCCTCAACACATCACAACTCTCCATACCCAAAACCCCCAACAGTCGCTTCAAATTCCAAATCTCATGCAAAGCCCAAAACGACCACCACCAAAACCCCAAAAACATTACTAACTCTGAAAACAAACAAAAACTCGACCGAAGAAACATCCTTTTAGGCATAGGCGGCCTGTCCATTGCCGCTCCCAACCTCACCCTAGCTGCCCCGGTCACTGCCCCTGACATCACCAAATGTGGGCCCGCCGACCTACCTGCCGGTGCTACCCCAACCAACTGCTGCCCGCCACCAACCACAAACATCATAGACTTCAAACTCCCTCCGCCGCCTCAAAAACTGCTAATCCGACCAGCGGCCCACTTAGCCGATAAAAAATACATTGAAAAATTCAACCGAGCCATCGAGCTCATGAAGGCTTTGCCGGAGGATGACCCGCGTAATTTTACGCAACAAGCGAATGTACACTGCGCCTATTGTAATGGACCTTACGATCAAACAGGGTTTCCCAATGTGGAGATTCAAGTGCATGATTGTTGGCTTTTTTACCCGTTTCATAGATGGTACTTGTACTTCTACGAGAAGATATTGGCAAAGTTGATCGATGATCCAACTTTTACGATCCCATTTTGGAACTGGGATTCGCCCGAGGGGATGATGATTCCGGATATGTTTGTGGACCCTTCGTCGCCACTTTACGACGGATTCCGGAACGCCGCCCACATGCCCCCGGCAGTTGTTGATTTGGGGTTTAATGGTACTGATACGAATACAAGCAATCAACAAAGGGTAATAGACAATCTCGCGATTATGTACCGACAAATGGTCACCAATGCAAAAACACCACTCCTCTTCCACGGAAGTGCTTATCGAGCTGGCGACCAACCCAGCCCCGGAGCTGGCTCCATCGAAAAAATCCCACACATTCCCATTCACCGATGGGTGGGAGACCCGAACCAGCCCAACTTTGAAGACCTGGGCAACTTATACTCATCTGCTCGAGATACCCTCTTCTATTGCCACCACGCCAACGTGGATCGGACATGGACCATATGGAAAACCCTAGGCGGAAAAGACTACACCGACCCCGACTGGCTAAACTCGTCCTTCGTGTTTTACGATGAAAATAAACAACTCGTACGCGTCTATAGCAAAGATTGTCTAGACCAAAGAAACCTTGGGTATGAATACCAAAACGTCGACATTCCTTGGCTAAAAAGCAAACCAGTGCCACAAGTGAAACAGTCCAAGGTGGCAAGTGAAACAAAAAGTGGTGATGTGGCATTTCCAGTGAAACTCAATAATGTGATGAAGGTGGTGGTTAAGAGGCCGAAGAAACAACAAGGGGAGGAGATGCTTGTGATTGAAGGGATAGAGTTCAATAGCGAGAAATTTGTGAAGTTTGATGTTTTTGTTAATGATGAAGACGAGGAAGGGAGTGGGCCTGATAAAACGGAGTTTGTTGGGAGTTTTGCACATTTGCCACATAAACATAAGGATGGGATGAAGAAGAAGACGAAGACATGTTTGCGGATAGGGTTATCAGAGGTGTTGAAGGATTTGGAGGTTGAAGGTGATGAAAGTGTGTTGGTGAGTTTGGTGCCTAGGGCTGGAGTTGATGATGTGAAAATTGATGGTGTTAAAATTGAGTTTGATTCTTGA

Network for GWHGAAZE002551

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00264.21	Tyrosinase	167	375	6.70E-33
PF12142.9	PPO1_DWL	380	430	3.50E-24
PF12143.9	PPO1_KFDV	450	572	2.20E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00422	E1.10.3.1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0046148	biological_process	pigment biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0004097	molecular_function	catechol oxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.061
	SRR3591706	second leaf	1.042
	SRR3591707	mature leaf	9.271
	SRR3591708	Shoot apex	0.449
	SRR3591709	Stem	4.226
	SRR3591710	White floral bud	10.186
	SRR3591711	White flower	68.793
	SRR3591712	Green floral bud	2.952
	SRR3591713	Yellow flower	160.979
SRP173429	SRR8316895	Juvenile bud stage	1.644
	SRR8316896	Juvenile bud stage	3.178
	SRR8316897	Juvenile bud stage	1.712
	SRR8316894	Third green stage	0.835
	SRR8316900	Third green stage	1.494
	SRR8316901	Third green stage	4.263
	SRR8316898	Complete white stage	8.373
	SRR8316899	Complete white stage	4.234
	SRR8316903	Complete white stage	15.386
	SRR8316902	Silver flowering stage	44.069
	SRR8316904	Silver flowering stage	75.089
	SRR8316905	Silver flowering stage	33.364
	SRR8316906	Gold flowering stage	258.934
	SRR8316907	Gold flowering stage	238.364
	SRR8316908	Gold flowering stage	338.463
SRP132670	SRR6706286	Control	12.048
	SRR6706287	Light intensity 50%	8.017
	SRR6706288	Light intensity 20%	2.877
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.833
	CNS0095593	Slightly white alabastrum(diploid) 2	3.512
	CNS0095594	Slightly white alabastrum(diploid) 3	6.085
	CNS0095595	Whole white alabastrum(diploid) 2	2.483
	CNS0095596	Whole white alabastrum(diploid) 3	1.368
	CNS0095597	Whole white alabastrum(diploid) 4	2.211
	CNS0095598	Silvery flower (diploied) 1	6.792
	CNS0095599	Silvery flower (diploied) 2	5.230
	CNS0095600	Silvery flower (diploied) 3	17.599
	CNS0095601	Golden flower (diploid) 1	38.550
	CNS0095602	Golden flower (diploid) 2	111.834
	CNS0095603	Golden flower (diploid) 3	106.524
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.097
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.460
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.355
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.775
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.572
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.344
	CNS0095610	Silvery flower (tetraploid) 1	42.669
	CNS0095611	Silvery flower (tetraploid) 2	25.203
	CNS0095612	Silvery flower (tetraploid) 3	131.933
	CNS0095613	Golden flower (tetraploid) 1	234.260
	CNS0095614	Golden flower (tetraploid) 2	253.133
	CNS0095615	Golden flower (tetraploid) 3	797.113
CRA001975	CRR073297	Stem 1	2.135
	CRR073298	Stem 2	2.129
	CRR073299	Stem 3	0.926
	CRR073300	Leaf 1	1.042
	CRR073301	Leaf 2	2.076
	CRR073302	Leaf 3	0.461
	CRR073303	Juvenile bud 1	0.781
	CRR073304	Juvenile bud 2	1.253
	CRR073305	Juvenile bud 3	0.933
	CRR073306	Third green 1	77.152
	CRR073307	Third green 2	25.600
	CRR073308	Third green 3	63.086
	CRR073309	Second white 1	318.523
	CRR073310	Second white 2	322.687
	CRR073311	Second white 3	421.875
	CRR073312	Silver flowering 1	944.824
	CRR073313	Silver flowering 2	821.586
	CRR073314	Silver flowering 3	987.321
	CRR073315	Gold flowering 1	1.850
	CRR073316	Gold flowering 2	6.154
	CRR073317	Gold flowering 3	17.004
	CRR073318	Tawny withering 1	56.329
	CRR073319	Tawny withering 2	129.706
	CRR073320	Tawny withering 3	8.432