Gene detail

Detail information of GWHGAAZE002558

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010100570.1	8.88478E-32	Polyphenol oxidase [Morus notabilis]
Swissprot	tr\|P43309\|PPO_MALDO	2E-26	Polyphenol oxidase, chloroplastic (Precursor)
trEMBL	tr\|W9S222\|W9S222_9ROSA	3E-32	Polyphenol oxidase {ECO:0000313\|EMBL:EXB82813.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	81625557	81627891	+
GWHAAZE00000001	mRNA	81625557	81627891	+
GWHAAZE00000001	exon	81625557	81626015	+
GWHAAZE00000001	exon	81626103	81626208	+
GWHAAZE00000001	exon	81627455	81627891	+
GWHAAZE00000001	CDS	81625557	81626015	+
GWHAAZE00000001	CDS	81626103	81626208	+
GWHAAZE00000001	CDS	81627455	81627891	+

Transcript Sequence
>GWHTAAZE002562 ATGGCTTCTCTTGTTCAAGTTTCATCCACTTGTACCCCCAATTCCTTCTCTTCCTCCTCCTCCTATTCTAATTTATTGTTTGCTAACAAGTCCTCCAAAATACTCATAATTGGAAAAAACTACCATCTCTTCAACTCCTCATGCAAAGCCACAAATGGTGGTGCTGAAAACCCTAGGAGGCATGTTTCCCAAAAAGGGCAAAATTCTCAAACTGGACTCAAGATTGATAGGAGGAATGTGCTCTTAGGTTTAAACGGGCTCTATGGAACTGCCGCCAATCTCGAGCGGTCGGCCATTGCACTTCCGGTGCCCGGGCCGGACATTACAACCTGTGGAGACGCTACGCCAGATAATGGCATCCACAGGCAATACGCTTGTTGCCCACCGTCCACGAGTATCGAGGATTACAAAATACCAACCATGGCGATAACAAAGATGCGACCGGCCGCACATTTGGTCCTGAGGTCCATGGCGCATACTGCAACAGTGCCTACAAACAACTTGGTTACCCCGTTAAAGTGCTACAAGTCCACTTCTCGTGGCTCTTCTTGCCTTTCCACAGATGGGTCCACGTTTGCAGGGACGACGAGGGTGGTTGTCTTCCCTGTAACACTGGACAAAAAAGTGACGGTTGTAGTGCAAAGGCCAACAAAGTCGAGGACTAAAGAAGAAAAAGAAAATACACCTAAGGTACTGGTGTTAGAAAGGATAGAATACAGTATGGAGAAATTTGTTAAGTTTGATGTTTACATTAACGATGAAGACGAAAATGGACATGCTGCTCCAAGTAACACGGAGTACTTAGGGAGCTTCACAAGCTTGCCACATTGTGGCAAGCACGCAATGAAGAGTATTGCTAGGCTGGTGGTAGGGTTAACAGCAGCAGTTAAGGGCTTGGAAGCTGCTAATGATGATATTGTGGTGGTCACACTGGTGCCTAGGGCTGGGAGTGAGGATGTGAAAGTTGGTTCCATCAATATTAAGTTTGCTTCCAGAAAGTAG

Network for GWHGAAZE002558

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12143.9	PPO1_KFDV	201	329	8.10E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00422	E1.10.3.1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0004097	molecular_function	catechol oxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.087
	SRR3591706	second leaf	3.597
	SRR3591707	mature leaf	0.361
	SRR3591708	Shoot apex	0.623
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.723
	SRR3591711	White flower	0.314
	SRR3591712	Green floral bud	1.826
	SRR3591713	Yellow flower	0.034
SRP173429	SRR8316895	Juvenile bud stage	0.188
	SRR8316896	Juvenile bud stage	0.107
	SRR8316897	Juvenile bud stage	0.580
	SRR8316894	Third green stage	0.130
	SRR8316900	Third green stage	1.144
	SRR8316901	Third green stage	0.881
	SRR8316898	Complete white stage	0.155
	SRR8316899	Complete white stage	0.576
	SRR8316903	Complete white stage	0.080
	SRR8316902	Silver flowering stage	0.093
	SRR8316904	Silver flowering stage	0.109
	SRR8316905	Silver flowering stage	0.068
	SRR8316906	Gold flowering stage	0.068
	SRR8316907	Gold flowering stage	0.066
	SRR8316908	Gold flowering stage	0.288
SRP132670	SRR6706286	Control	0.814
	SRR6706287	Light intensity 50%	0.676
	SRR6706288	Light intensity 20%	0.842
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.215
	CNS0095593	Slightly white alabastrum(diploid) 2	0.177
	CNS0095594	Slightly white alabastrum(diploid) 3	0.119
	CNS0095595	Whole white alabastrum(diploid) 2	0.146
	CNS0095596	Whole white alabastrum(diploid) 3	0.028
	CNS0095597	Whole white alabastrum(diploid) 4	0.015
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.013
	CNS0095600	Silvery flower (diploied) 3	0.374
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.136
	CNS0095603	Golden flower (diploid) 3	0.030
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.466
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.100
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.283
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.103
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.403
	CNS0095610	Silvery flower (tetraploid) 1	0.370
	CNS0095611	Silvery flower (tetraploid) 2	0.205
	CNS0095612	Silvery flower (tetraploid) 3	0.140
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.146
CRA001975	CRR073297	Stem 1	0.269
	CRR073298	Stem 2	0.429
	CRR073299	Stem 3	0.645
	CRR073300	Leaf 1	1.059
	CRR073301	Leaf 2	0.381
	CRR073302	Leaf 3	0.454
	CRR073303	Juvenile bud 1	0.364
	CRR073304	Juvenile bud 2	0.139
	CRR073305	Juvenile bud 3	0.556
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.024
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.027
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.090
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000