Gene detail

Detail information of GWHGAAZE002562

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002300430.1	0	dioxygenase family protein [Populus trichocarpa]
COG	YP_004572412.1	4E-31	oxidoreductase
Swissprot	tr\|Q9SQ80\|G2OX1_PEA	5E-167	Gibberellin 2-beta-dioxygenase 1
trEMBL	tr\|B9GGW7\|B9GGW7_POPTR	0	Dioxygenase family protein {ECO:0000313\|EMBL:EEE85235.1}
TAIR10	AT1G30040.1	3E-114	gibberellin 2-oxidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	81690250	81692684	-
GWHAAZE00000001	mRNA	81690250	81692684	-
GWHAAZE00000001	exon	81692284	81692684	-
GWHAAZE00000001	exon	81691427	81691766	-
GWHAAZE00000001	exon	81690250	81690501	-
GWHAAZE00000001	CDS	81692284	81692684	-
GWHAAZE00000001	CDS	81691427	81691766	-
GWHAAZE00000001	CDS	81690250	81690501	-

Transcript Sequence
>GWHTAAZE002566 ATGGTAGTCTTAACCAAACCAGCAATAGAACAGTTCTGTACACTCAAATCCTATAAACCTACCACATTCCTCCCCGCTATCCCCATAGTGGACCTCTCTAAACCTGATTCCAAACACCTCCTTGTTAAGGCCTGCCAAGAACTTGGATTCTTTAAGGTCATTAACCATGGAGTTCCCATGGAATTCATCACTAAACTGGAATCGGAAGCCGTAAATTTCTTCAATTTGCCTCCTTCCGAGAAGGAAAAAGCAGGGCCTCCTCACCCTTTTGGATATGGAAATAAGAGCATTGGATTGAACGGCGATATCGGTTGGCTCGAATATCTTCTCTTAACTACTAATCAAGAATTCAGTTACCAAAGGCTTGTTTCAATTTTCGGCCAAAACCCAGATAAATTTTGCGGAGCTGTGAGTGATTATGTTGGGGCAGTGAAGAATATGGCATGTGAGATTCTTGAAATGTTGGCAGATGGATTGAAGATTGAAGAGAAGGATGTGTTTAGTAAGCTGTTGATGGATGAAGAGAGTGATTCTCTGTTCAGGTTGAATCACTACCCACCAAGTCCAAGCCCTGAGAAAGAGGGGTTGATTGGGTTTGGAGAGCACACTGATCCACAAATCATATCTGTGTTGAGATCAAATAACACAACTGGTCTTCAAATCTCTTTGAAGGATGGGAATTGGATATCTGTTCCCCCTGACCAGAACTCCTTCTTCATCAATGTTGGTGACTCTTTGCAGGTAATGACTAATGGGAAATTTAAGAGTGTGAAGCATAGGGTATTGGCAAATAGTAGAAAATCAAGGGTGTCAATGATTTATTTTGGAGGACCACCGTTGAGTGAGAAGATAGCTCCATTGCCTTCACTAATCAAAGGAGAAGAGGACAGCTTGTACAGGGAGTTTACTTGGTTTGAATACAAAAAATCCGCCTACAATTCTAGGCTTGCCGATAATAGGTTGGGCCTCTTTGAGAAAATCACAGCCTCATAA

Network for GWHGAAZE002562

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	27	94	2.80E-14
PF03171.21	2OG-FeII_Oxy	177	276	1.80E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04125	E1.14.11.13	Biosynthesis of secondary metabolites	map01110
K04125	E1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.453
	SRR3591706	second leaf	0.930
	SRR3591707	mature leaf	6.463
	SRR3591708	Shoot apex	0.792
	SRR3591709	Stem	22.235
	SRR3591710	White floral bud	2.706
	SRR3591711	White flower	31.323
	SRR3591712	Green floral bud	6.880
	SRR3591713	Yellow flower	5.082
SRP173429	SRR8316895	Juvenile bud stage	5.864
	SRR8316896	Juvenile bud stage	9.578
	SRR8316897	Juvenile bud stage	7.829
	SRR8316894	Third green stage	2.129
	SRR8316900	Third green stage	9.356
	SRR8316901	Third green stage	20.401
	SRR8316898	Complete white stage	2.072
	SRR8316899	Complete white stage	4.597
	SRR8316903	Complete white stage	2.550
	SRR8316902	Silver flowering stage	30.170
	SRR8316904	Silver flowering stage	17.408
	SRR8316905	Silver flowering stage	4.769
	SRR8316906	Gold flowering stage	11.764
	SRR8316907	Gold flowering stage	16.487
	SRR8316908	Gold flowering stage	23.078
SRP132670	SRR6706286	Control	0.918
	SRR6706287	Light intensity 50%	0.541
	SRR6706288	Light intensity 20%	0.732
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.349
	CNS0095593	Slightly white alabastrum(diploid) 2	10.265
	CNS0095594	Slightly white alabastrum(diploid) 3	15.006
	CNS0095595	Whole white alabastrum(diploid) 2	6.767
	CNS0095596	Whole white alabastrum(diploid) 3	8.910
	CNS0095597	Whole white alabastrum(diploid) 4	8.577
	CNS0095598	Silvery flower (diploied) 1	3.974
	CNS0095599	Silvery flower (diploied) 2	1.844
	CNS0095600	Silvery flower (diploied) 3	8.424
	CNS0095601	Golden flower (diploid) 1	0.822
	CNS0095602	Golden flower (diploid) 2	6.288
	CNS0095603	Golden flower (diploid) 3	6.168
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.935
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.483
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.054
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.484
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.172
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.131
	CNS0095610	Silvery flower (tetraploid) 1	17.658
	CNS0095611	Silvery flower (tetraploid) 2	4.173
	CNS0095612	Silvery flower (tetraploid) 3	8.467
	CNS0095613	Golden flower (tetraploid) 1	5.386
	CNS0095614	Golden flower (tetraploid) 2	7.250
	CNS0095615	Golden flower (tetraploid) 3	1.511
CRA001975	CRR073297	Stem 1	3.871
	CRR073298	Stem 2	3.720
	CRR073299	Stem 3	3.336
	CRR073300	Leaf 1	6.148
	CRR073301	Leaf 2	6.496
	CRR073302	Leaf 3	5.049
	CRR073303	Juvenile bud 1	1.400
	CRR073304	Juvenile bud 2	1.313
	CRR073305	Juvenile bud 3	2.854
	CRR073306	Third green 1	106.496
	CRR073307	Third green 2	119.198
	CRR073308	Third green 3	105.087
	CRR073309	Second white 1	111.868
	CRR073310	Second white 2	109.339
	CRR073311	Second white 3	64.169
	CRR073312	Silver flowering 1	85.252
	CRR073313	Silver flowering 2	98.782
	CRR073314	Silver flowering 3	89.572
	CRR073315	Gold flowering 1	6.642
	CRR073316	Gold flowering 2	21.266
	CRR073317	Gold flowering 3	3.267
	CRR073318	Tawny withering 1	1.609
	CRR073319	Tawny withering 2	6.950
	CRR073320	Tawny withering 3	1.720