Detail information of GWHGAAZE002577


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011098150.10PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1 [Sesamum indicum]
COGYP_007108464.11E-128solanesyl diphosphate synthase
Swissprottr|Q8S948|SPS1_ARATH0Solanesyl diphosphate synthase 1
trEMBLtr|B9SR69|B9SR69_RICCO0Solanesyl diphosphate synthase, putative {ECO:0000313|EMBL:EEF33905.1}
TAIR10AT1G78510.13E-163solanesyl diphosphate synthase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8215216982155508-
GWHAAZE00000001mRNA8215216982155508-
GWHAAZE00000001exon8215528682155508-
GWHAAZE00000001exon8215490582155029-
GWHAAZE00000001exon8215396882154095-
GWHAAZE00000001exon8215356082153663-
GWHAAZE00000001exon8215311382153240-
GWHAAZE00000001exon8215216982152717-
GWHAAZE00000001CDS8215528682155508-
GWHAAZE00000001CDS8215490582155029-
GWHAAZE00000001CDS8215396882154095-
GWHAAZE00000001CDS8215356082153663-
GWHAAZE00000001CDS8215311382153240-
GWHAAZE00000001CDS8215216982152717-
Transcript Sequence

Network for GWHGAAZE002577

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00348.18polyprenyl_synt1243696.10E-75
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K05356SPS, sds Biosynthesis of secondary metabolites map01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0008299biological_processisoprenoid biosynthetic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.065
SRR3591706second leaf23.424
SRR3591707mature leaf32.802
SRR3591708Shoot apex12.179
SRR3591709Stem5.405
SRR3591710White floral bud73.143
SRR3591711White flower193.993
SRR3591712Green floral bud35.004
SRR3591713Yellow flower340.359
SRP173429 SRR8316895Juvenile bud stage 6.950
SRR8316896Juvenile bud stage 6.704
SRR8316897Juvenile bud stage 4.255
SRR8316894Third green stage 7.517
SRR8316900Third green stage 43.670
SRR8316901Third green stage 25.464
SRR8316898Complete white stage 21.431
SRR8316899Complete white stage 30.107
SRR8316903Complete white stage 20.866
SRR8316902Silver flowering stage38.212
SRR8316904Silver flowering stage54.000
SRR8316905Silver flowering stage28.320
SRR8316906Gold flowering stage 116.923
SRR8316907Gold flowering stage 119.021
SRR8316908Gold flowering stage 140.567
SRP132670SRR6706286Control44.264
SRR6706287Light intensity 50%47.162
SRR6706288Light intensity 20%54.061
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.523
CNS0095593Slightly white alabastrum(diploid) 25.239
CNS0095594Slightly white alabastrum(diploid) 35.965
CNS0095595Whole white alabastrum(diploid) 26.864
CNS0095596Whole white alabastrum(diploid) 38.746
CNS0095597Whole white alabastrum(diploid) 48.124
CNS0095598Silvery flower (diploied) 127.652
CNS0095599Silvery flower (diploied) 230.382
CNS0095600Silvery flower (diploied) 3155.135
CNS0095601Golden flower (diploid) 143.923
CNS0095602Golden flower (diploid) 2139.366
CNS0095603Golden flower (diploid) 3131.356
CNS0095604Slightly white alabastrum(tetraploid) 15.643
CNS0095605Slightly white alabastrum(tetraploid) 24.962
CNS0095606Slightly white alabastrum(tetraploid) 312.973
CNS0095607Whole white alabastrum(tetraploid) 12.364
CNS0095608Whole white alabastrum(tetraploid) 23.946
CNS0095609Whole white alabastrum(tetraploid) 319.832
CNS0095610Silvery flower (tetraploid) 198.770
CNS0095611Silvery flower (tetraploid) 2125.213
CNS0095612Silvery flower (tetraploid) 390.029
CNS0095613Golden flower (tetraploid) 199.412
CNS0095614Golden flower (tetraploid) 2107.538
CNS0095615Golden flower (tetraploid) 3167.138
CRA001975CRR073297Stem 111.880
CRR073298Stem 213.256
CRR073299Stem 313.087
CRR073300Leaf 118.780
CRR073301Leaf 217.271
CRR073302Leaf 323.804
CRR073303Juvenile bud 119.132
CRR073304Juvenile bud 225.830
CRR073305Juvenile bud 317.214
CRR073306Third green 16.061
CRR073307Third green 26.148
CRR073308Third green 36.280
CRR073309Second white 193.734
CRR073310Second white 281.235
CRR073311Second white 374.479
CRR073312Silver flowering 1155.482
CRR073313Silver flowering 2215.894
CRR073314Silver flowering 3185.217
CRR073315Gold flowering 150.880
CRR073316Gold flowering 272.325
CRR073317Gold flowering 335.714
CRR073318Tawny withering 19.094
CRR073319Tawny withering 27.882
CRR073320Tawny withering 36.105