Gene detail

Detail information of GWHGAAZE002590

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285634.1	0	PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Vitis vinifera]
COG	YP_007768743.1	3E-89	dTDP-glucose 4,6-dehydratase
Swissprot	tr\|Q9SYM5\|RHM1_ARATH	0	UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase {ECO:0000305\|PubMed:17190829}
trEMBL	tr\|F6H2K4\|F6H2K4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46191.1}
TAIR10	AT1G78570.1	0	rhamnose biosynthesis 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	82340300	82342622	+
GWHAAZE00000001	mRNA	82340300	82342622	+
GWHAAZE00000001	exon	82340300	82341874	+
GWHAAZE00000001	exon	82342170	82342622	+
GWHAAZE00000001	CDS	82340300	82341874	+
GWHAAZE00000001	CDS	82342170	82342622	+

Transcript Sequence
>GWHTAAZE002594 ATGGCTACTTATACGCCCAAGAACATCCTCATAACTGGGGCTGCTGGATTTATTGCATCTCATGTTGCTAACCGACTCGTCCGGAGCTACCCAGAGTACAAGATTGTTGTGCTCGACAAGCTTGATTATTGTTCAAATCTTAAGAATCTTCTTCCCTCTCAATCATCCCCCAACTTCAAGTTTGTTAAGGGGGACATTGGCAGCGCCGATCTAGTTAACTACCTTCTCATCACTGAGTCAATTGACACCATCATGCACTTTGCAGCCCAGACACATGTTGATAACTCCTTCGGTAACAGCTTTGAGTTTACCAAGAACAACATTTATGGTACCCATGTACTTTTAGAGGCCTGCAAAGTCACTGGCCAGATCAGAAGGTTTATCCATGTAAGCACTGATGAGGTCTATGGGGAGACAGAAGAAGATGCTGTTGTGGGAAACCATGAAGCCTCGCAACTCCTTCCCACAAATCCATATTCAGCAACAAAAGCTGGGGCAGAAATGCTTGTTATGGCGTATGGTAGGTCGTATGGGTTACCGGTCATAACCACTCGAGGAAATAATGTTTATGGCCCCAATCAATTCCCTGAAAAGTTAATCCCAAAGTTCATCCTTTTGGCTATGAGAGGAAAGCCTCTTCCAATCCATGGAGATGGCTCTAATGTGCGGAGTTATCTGTATTGCGAGGATGTTGCCGAGGCTTTTGAAGTCATTCTTCACAAAGGAGAAGTAGGCCATGTTTACAATATTGGGACAAAGAAGGAGAGGAGAGTGATTGATGTTGCCAGAGATATGTGCAAACTTTTCTCAATGAATCCTGAAACAAGCATCAAGTTTGTGGATAACAGGCCATTTAATGATCAAAGATACTTTCTTGATGACCAGAAGTTGAAGAATCTTGGTTGGTCTGAGAGAACCACATGGGTGGAGGGGTTGAAGAAGACTATGGAGTGGTACACCAGCCACCCTAATTGGTGGGGTGATGTCTCAGGGGCATTGCTTCCTCATCCTAGAATGCTTATGATGCCTGGTGGGATAGAGAGACATTTCGATGAGGCTGATAATGGTGATTCTGAATCTTCTCAGTTCTTGGGTAATCCTAGTCAGACTGGAATGGTGGTTCCAGTTACCAAAACCAGCAGCTCTTCTCAAAAACTGCCATTCAAGTTCTTGATTTATGGTAGGACCGGGTGGATCGGTGGTCTACTCGGGAAGTTATGCGATAAACAGGGGATTCCATACGAGTATGGACGGGGACGACTGGAGGATCGTTCACAACTTCTGTTAGACATTCAAAATGTTAAGCCCACACATGTTTTCAATGCTGCTGGTGTGACTGGTAGACCCAATGTTGATTGGTGTGAATCTCACAAGCCAGATACAATTCGCACCAATGTTGCTGGAACGTTGAACTTGGCAGATGTTTGCAGAGAGCAGGGACTTCTTATGATGAATTTTGCTACTGGATGCATATTTGAATATGATGCTGCACATCCAGAAGGCTCCGGCATTGGGTTTAAAGAGGAAGACAAGCCCAATTTCTTTGGTTCTTTCTATTCCAAGACCAAAGCCATGGTTGAAGAGCTTTTGAACGAGTACGACAATGTTTGCACCCTTAGAGTTCGCATGCCGATATCTTCAGACCTGAGCAACCCAAGAAACTTCATCACCAAAATTTCTCGTTACAATAAAGTGGTTAACATACCAAACAGCATGACCATCTTGGATGAGCTTCTCCCTATTTCAATTGAAATGGCCAAACGGAACCTCAAGGGCATATGGAACTTTACGAATCCTGGAGTGGTTAGCCATAATGAGATTCTGGAGATGTACAAGAAATATATAGACCCGGATTTCAAATGGGCCAATTTCACGCTCGAAGAGCAAGCCAAGGTGATAGTTGCTGCTCGAAGCAATAACGAGATGGACGCATCGAAGTTGAAGAAAGAGTTCCCCCAGTTGCTACCGATCAAGGATTCGTTGATCAAGTATGTCTTTGAACCCAACAAAAAAAACTTTGCAGGATAA

Network for GWHGAAZE002590

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0185

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.6	GDP_Man_Dehyd	10	315	6.20E-68
PF04321.18	RmlD_sub_bind	389	560	6.40E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12450	RHM	Metabolic pathways	map01100
K12450	RHM	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009225	biological_process	nucleotide-sugar metabolic process
GO:0008460	molecular_function	dTDP-glucose 4,6-dehydratase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	285.751
	SRR3591706	second leaf	83.338
	SRR3591707	mature leaf	39.279
	SRR3591708	Shoot apex	90.038
	SRR3591709	Stem	110.906
	SRR3591710	White floral bud	121.676
	SRR3591711	White flower	96.430
	SRR3591712	Green floral bud	178.998
	SRR3591713	Yellow flower	73.667
SRP173429	SRR8316895	Juvenile bud stage	163.047
	SRR8316896	Juvenile bud stage	214.412
	SRR8316897	Juvenile bud stage	151.477
	SRR8316894	Third green stage	67.006
	SRR8316900	Third green stage	207.836
	SRR8316901	Third green stage	244.232
	SRR8316898	Complete white stage	80.012
	SRR8316899	Complete white stage	333.417
	SRR8316903	Complete white stage	122.778
	SRR8316902	Silver flowering stage	42.859
	SRR8316904	Silver flowering stage	49.134
	SRR8316905	Silver flowering stage	22.785
	SRR8316906	Gold flowering stage	70.298
	SRR8316907	Gold flowering stage	65.549
	SRR8316908	Gold flowering stage	79.761
SRP132670	SRR6706286	Control	149.749
	SRR6706287	Light intensity 50%	183.735
	SRR6706288	Light intensity 20%	205.193
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	125.013
	CNS0095593	Slightly white alabastrum(diploid) 2	171.404
	CNS0095594	Slightly white alabastrum(diploid) 3	122.769
	CNS0095595	Whole white alabastrum(diploid) 2	141.724
	CNS0095596	Whole white alabastrum(diploid) 3	78.438
	CNS0095597	Whole white alabastrum(diploid) 4	102.927
	CNS0095598	Silvery flower (diploied) 1	131.248
	CNS0095599	Silvery flower (diploied) 2	142.390
	CNS0095600	Silvery flower (diploied) 3	157.135
	CNS0095601	Golden flower (diploid) 1	125.223
	CNS0095602	Golden flower (diploid) 2	187.019
	CNS0095603	Golden flower (diploid) 3	185.465
	CNS0095604	Slightly white alabastrum(tetraploid) 1	88.717
	CNS0095605	Slightly white alabastrum(tetraploid) 2	64.269
	CNS0095606	Slightly white alabastrum(tetraploid) 3	173.226
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.077
	CNS0095608	Whole white alabastrum(tetraploid) 2	56.196
	CNS0095609	Whole white alabastrum(tetraploid) 3	146.500
	CNS0095610	Silvery flower (tetraploid) 1	71.691
	CNS0095611	Silvery flower (tetraploid) 2	61.926
	CNS0095612	Silvery flower (tetraploid) 3	75.953
	CNS0095613	Golden flower (tetraploid) 1	41.936
	CNS0095614	Golden flower (tetraploid) 2	67.708
	CNS0095615	Golden flower (tetraploid) 3	54.457
CRA001975	CRR073297	Stem 1	184.614
	CRR073298	Stem 2	188.971
	CRR073299	Stem 3	197.598
	CRR073300	Leaf 1	335.709
	CRR073301	Leaf 2	353.701
	CRR073302	Leaf 3	271.415
	CRR073303	Juvenile bud 1	322.070
	CRR073304	Juvenile bud 2	318.226
	CRR073305	Juvenile bud 3	453.144
	CRR073306	Third green 1	133.512
	CRR073307	Third green 2	116.537
	CRR073308	Third green 3	123.228
	CRR073309	Second white 1	147.709
	CRR073310	Second white 2	90.193
	CRR073311	Second white 3	86.249
	CRR073312	Silver flowering 1	148.805
	CRR073313	Silver flowering 2	176.905
	CRR073314	Silver flowering 3	121.346
	CRR073315	Gold flowering 1	94.547
	CRR073316	Gold flowering 2	161.281
	CRR073317	Gold flowering 3	133.444
	CRR073318	Tawny withering 1	217.844
	CRR073319	Tawny withering 2	201.897
	CRR073320	Tawny withering 3	245.068