Gene detail

Detail information of GWHGAAZE002598

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009786256.1	1.9725E-127	PREDICTED: 50S ribosomal protein L13, chloroplastic [Nicotiana sylvestris]
COG	NP_488228.1	1E-63	50S ribosomal protein L13
Swissprot	tr\|Q9SYL9\|RK13_ARATH	9E-118	50S ribosomal protein L13, chloroplastic (Precursor)
trEMBL	tr\|K4DCX4\|K4DCX4_SOLLC	1E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g014390.1.1}
TAIR10	AT1G78630.1	5E-94	Ribosomal protein L13 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	82489454	82492632	+
GWHAAZE00000001	mRNA	82489454	82492632	+
GWHAAZE00000001	exon	82489454	82489708	+
GWHAAZE00000001	exon	82490622	82490807	+
GWHAAZE00000001	exon	82492020	82492190	+
GWHAAZE00000001	exon	82492516	82492632	+
GWHAAZE00000001	CDS	82489454	82489708	+
GWHAAZE00000001	CDS	82490622	82490807	+
GWHAAZE00000001	CDS	82492020	82492190	+
GWHAAZE00000001	CDS	82492516	82492632	+

Transcript Sequence
>GWHTAAZE002602 ATGGCGATTTCTTCTTATGCTTCATCATCGTTCATGCTCACATCTCCTTCCACAAAACCCTACCTCTCCTCCTCTCTTAATAATAAAACCCCCTTTCTTGGATTCCCAGCAGCATCCTCATCGAAGACCCGCATTAACGACTCTCCTAATTCCAGAACAAACCCTACATTCCAGATTCGTTGCGTAAACAAAGCTGCCTCCGTTATACCTGTCGATCAGCGTTGGATGTTCGAAGACACCGACTTCAAAGGACCAGACATTTGGAATACAACATGGTACCCTAAAGCTGTAGATCATGTGAACACAGAAAAGACATGGTATGTTGTTGATGCTACTGATAAAATTCTTGGGAGGCTAGCATCTACTATAGCTATTCATATTCGAGGGAAGAATCTAGCAACCTATACTCCTAGTGTGGACATGGGGGCATTTGTCATTGTGGTAAATGCAGAGAAAATAGCCGTTTCTGGTAAAAAAAGGCACCAAAAGCTATATCGAAGGCATTCCGGAAGACCTGGAGGAATGACAGTGGAGACATTCGACCAGCTGCAGCAAAGAATTCCTGAGAGAATTATTGAGCACGCAGTCCGGGGCATGCTTCCTAAAGGGAGGCTCGGAAGAGATCTGTTTACCCACCTTAAAGTTTACAAGGGCCCAAACCATCCGCACGAGGCACAAAAGCCTATTGATTTGCCTATTAGGGACAAAAGGATTACTAGGCAGGACTAG

Network for GWHGAAZE002598

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00572.19	Ribosomal_L13	104	222	3.00E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02871	RP-L13, MRPL13, rplM	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	117.028
	SRR3591706	second leaf	179.123
	SRR3591707	mature leaf	97.352
	SRR3591708	Shoot apex	198.748
	SRR3591709	Stem	36.741
	SRR3591710	White floral bud	62.594
	SRR3591711	White flower	81.634
	SRR3591712	Green floral bud	61.494
	SRR3591713	Yellow flower	76.257
SRP173429	SRR8316895	Juvenile bud stage	54.956
	SRR8316896	Juvenile bud stage	52.548
	SRR8316897	Juvenile bud stage	41.398
	SRR8316894	Third green stage	26.770
	SRR8316900	Third green stage	69.726
	SRR8316901	Third green stage	56.715
	SRR8316898	Complete white stage	21.000
	SRR8316899	Complete white stage	44.753
	SRR8316903	Complete white stage	40.870
	SRR8316902	Silver flowering stage	21.934
	SRR8316904	Silver flowering stage	32.297
	SRR8316905	Silver flowering stage	19.678
	SRR8316906	Gold flowering stage	45.839
	SRR8316907	Gold flowering stage	45.883
	SRR8316908	Gold flowering stage	37.224
SRP132670	SRR6706286	Control	83.602
	SRR6706287	Light intensity 50%	75.169
	SRR6706288	Light intensity 20%	75.610
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.506
	CNS0095593	Slightly white alabastrum(diploid) 2	28.268
	CNS0095594	Slightly white alabastrum(diploid) 3	30.938
	CNS0095595	Whole white alabastrum(diploid) 2	31.104
	CNS0095596	Whole white alabastrum(diploid) 3	31.246
	CNS0095597	Whole white alabastrum(diploid) 4	21.540
	CNS0095598	Silvery flower (diploied) 1	71.348
	CNS0095599	Silvery flower (diploied) 2	65.618
	CNS0095600	Silvery flower (diploied) 3	73.749
	CNS0095601	Golden flower (diploid) 1	54.032
	CNS0095602	Golden flower (diploid) 2	68.017
	CNS0095603	Golden flower (diploid) 3	69.629
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.370
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.774
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.433
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.982
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.976
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.229
	CNS0095610	Silvery flower (tetraploid) 1	48.192
	CNS0095611	Silvery flower (tetraploid) 2	65.193
	CNS0095612	Silvery flower (tetraploid) 3	45.487
	CNS0095613	Golden flower (tetraploid) 1	36.353
	CNS0095614	Golden flower (tetraploid) 2	43.360
	CNS0095615	Golden flower (tetraploid) 3	51.464
CRA001975	CRR073297	Stem 1	87.699
	CRR073298	Stem 2	80.129
	CRR073299	Stem 3	96.585
	CRR073300	Leaf 1	39.872
	CRR073301	Leaf 2	53.782
	CRR073302	Leaf 3	49.863
	CRR073303	Juvenile bud 1	48.167
	CRR073304	Juvenile bud 2	48.464
	CRR073305	Juvenile bud 3	54.973
	CRR073306	Third green 1	25.844
	CRR073307	Third green 2	16.314
	CRR073308	Third green 3	18.972
	CRR073309	Second white 1	36.351
	CRR073310	Second white 2	18.912
	CRR073311	Second white 3	21.756
	CRR073312	Silver flowering 1	23.598
	CRR073313	Silver flowering 2	25.325
	CRR073314	Silver flowering 3	22.427
	CRR073315	Gold flowering 1	153.551
	CRR073316	Gold flowering 2	179.628
	CRR073317	Gold flowering 3	189.844
	CRR073318	Tawny withering 1	39.923
	CRR073319	Tawny withering 2	39.905
	CRR073320	Tawny withering 3	38.418