Gene detail

Detail information of GWHGAAZE002606

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009359369.1	9.70395E-50	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X3 [Pyrus x bretschneideri]
COG	YP_001958461.1	0.000000004	hypothetical protein Aasi_1443
Swissprot	tr\|C0LGG7\|Y1534_ARATH	3E-41	Probable LRR receptor-like serine/threonine-protein kinase At1g53420 (Precursor)
trEMBL	tr\|A0A059BN81\|A0A059BN81_EUCGR	8E-47	Uncharacterized protein {ECO:0000313\|EMBL:KCW67553.1} (Fragment)
TAIR10	AT1G53430.2	9E-36	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	82617167	82620001	+
GWHAAZE00000001	mRNA	82617167	82620001	+
GWHAAZE00000001	exon	82617167	82617237	+
GWHAAZE00000001	exon	82617353	82617402	+
GWHAAZE00000001	exon	82617561	82617919	+
GWHAAZE00000001	exon	82618955	82618988	+
GWHAAZE00000001	exon	82619760	82620001	+
GWHAAZE00000001	CDS	82617167	82617237	+
GWHAAZE00000001	CDS	82617353	82617402	+
GWHAAZE00000001	CDS	82617561	82617919	+
GWHAAZE00000001	CDS	82618955	82618988	+
GWHAAZE00000001	CDS	82619760	82620001	+

Transcript Sequence
>GWHTAAZE002610 ATGCCGGAATCCCGTTTCACATTTTGTAGGAATTTAGTTTCCAGCTATTCCTCTCACGAGGGGGACAACAAAACTCTTTGGTGCTTGAAGAAGGGCCTTCCTTGCACCCAAAAGCAAAAATATCATAAGCTCTTCATCAATTGTGGAGGCCAAGAAATGGACTTTGAGGGAGAAAAATATGAAGCTGATTTAACTCCAATGAAATCTGCATACTTCGTTGCTACTGGACAAAAATGGGCTTGTAGCGGGGCTGGTGTGTTTGTTGGCGATGATGATGCTCGTAACATAGAAGAAACAACTTCGAGTAACGTGACTGATGTGTACACTACAGCCCGCCTTGCCGCTACGTCTCTTAAGTACTACGGCCTTTGCTTGCTCAAGGGTAGATATAAAGTGCGCCTCCACTTTGCTGAAGTAAGGATTTCCAATGACCTTACATCAGACAGCCTTGGAAGACGAATATTTGATGTTTCAGTACAGGGTACCTTGGAGGGGAAAGACAAAGAAGATAAAGGTCCGGAGGAGATGCGGCTAAACCTAGACTGGCCCACAAGAAAGAAGATATGTCTAGGGATAGCGAGAGGATTAGCTTATCTTCACGAGGAGTCAAGGTTGAAAATTGTTCACCGAGACATAAAGGCTACCAATGTGCTGCTTGATAAGGATCTTAATGCAAAAATATCGGACTTTGGTTTGGCTAAGCTTGACGAAGAAGAGAACACGCATATCAGCACGCGAGTTGCTGGAACAATGTGA

Network for GWHGAAZE002606

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11721.9	Malectin	44	166	4.50E-21
PF00069.26	Pkinase	184	244	5.50E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.848
	SRR3591706	second leaf	17.720
	SRR3591707	mature leaf	26.929
	SRR3591708	Shoot apex	23.421
	SRR3591709	Stem	32.157
	SRR3591710	White floral bud	17.882
	SRR3591711	White flower	28.766
	SRR3591712	Green floral bud	11.628
	SRR3591713	Yellow flower	20.641
SRP173429	SRR8316895	Juvenile bud stage	22.306
	SRR8316896	Juvenile bud stage	33.291
	SRR8316897	Juvenile bud stage	12.078
	SRR8316894	Third green stage	12.227
	SRR8316900	Third green stage	15.486
	SRR8316901	Third green stage	20.803
	SRR8316898	Complete white stage	8.931
	SRR8316899	Complete white stage	31.852
	SRR8316903	Complete white stage	17.983
	SRR8316902	Silver flowering stage	6.481
	SRR8316904	Silver flowering stage	9.738
	SRR8316905	Silver flowering stage	5.288
	SRR8316906	Gold flowering stage	21.319
	SRR8316907	Gold flowering stage	14.433
	SRR8316908	Gold flowering stage	30.897
SRP132670	SRR6706286	Control	26.555
	SRR6706287	Light intensity 50%	21.265
	SRR6706288	Light intensity 20%	19.307
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.505
	CNS0095593	Slightly white alabastrum(diploid) 2	14.097
	CNS0095594	Slightly white alabastrum(diploid) 3	11.165
	CNS0095595	Whole white alabastrum(diploid) 2	10.741
	CNS0095596	Whole white alabastrum(diploid) 3	4.173
	CNS0095597	Whole white alabastrum(diploid) 4	7.170
	CNS0095598	Silvery flower (diploied) 1	34.222
	CNS0095599	Silvery flower (diploied) 2	36.241
	CNS0095600	Silvery flower (diploied) 3	18.410
	CNS0095601	Golden flower (diploid) 1	32.377
	CNS0095602	Golden flower (diploid) 2	25.641
	CNS0095603	Golden flower (diploid) 3	22.743
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.450
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.930
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.399
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.102
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.551
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.016
	CNS0095610	Silvery flower (tetraploid) 1	15.244
	CNS0095611	Silvery flower (tetraploid) 2	10.191
	CNS0095612	Silvery flower (tetraploid) 3	7.506
	CNS0095613	Golden flower (tetraploid) 1	11.541
	CNS0095614	Golden flower (tetraploid) 2	16.473
	CNS0095615	Golden flower (tetraploid) 3	5.001
CRA001975	CRR073297	Stem 1	20.649
	CRR073298	Stem 2	17.511
	CRR073299	Stem 3	12.691
	CRR073300	Leaf 1	12.976
	CRR073301	Leaf 2	12.493
	CRR073302	Leaf 3	9.559
	CRR073303	Juvenile bud 1	9.170
	CRR073304	Juvenile bud 2	7.179
	CRR073305	Juvenile bud 3	12.075
	CRR073306	Third green 1	3.289
	CRR073307	Third green 2	5.534
	CRR073308	Third green 3	5.363
	CRR073309	Second white 1	4.550
	CRR073310	Second white 2	6.789
	CRR073311	Second white 3	3.661
	CRR073312	Silver flowering 1	2.727
	CRR073313	Silver flowering 2	4.104
	CRR073314	Silver flowering 3	3.870
	CRR073315	Gold flowering 1	17.450
	CRR073316	Gold flowering 2	25.224
	CRR073317	Gold flowering 3	11.096
	CRR073318	Tawny withering 1	15.510
	CRR073319	Tawny withering 2	26.338
	CRR073320	Tawny withering 3	11.719