Detail information of GWHGAAZE002616


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007021791.10Tubby like protein 7 isoform 1 [Theobroma cacao]
Swissprottr|Q93VI8|TLP7_ARATH0Tubby-like F-box protein 7
trEMBLtr|A0A061F8E7|A0A061F8E7_THECC0Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125}
TAIR10AT1G53320.15E-138tubby like protein 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8289025182894891+
GWHAAZE00000001mRNA8289025182894891+
GWHAAZE00000001exon8289025182890689+
GWHAAZE00000001exon8289173782891824+
GWHAAZE00000001exon8289327982893408+
GWHAAZE00000001exon8289425182894891+
GWHAAZE00000001five_prime_UTR8289025182890332+
GWHAAZE00000001CDS8289033382890689+
GWHAAZE00000001CDS8289173782891824+
GWHAAZE00000001CDS8289327982893408+
GWHAAZE00000001CDS8289425182894821+
GWHAAZE00000001three_prime_UTR8289482282894891+
Transcript Sequence

Network for GWHGAAZE002616

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box561033.20E-05
PF01167.19Tub1193762.20E-98
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTUB
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.210
SRR3591706second leaf15.487
SRR3591707mature leaf19.605
SRR3591708Shoot apex31.321
SRR3591709Stem34.586
SRR3591710White floral bud26.334
SRR3591711White flower32.835
SRR3591712Green floral bud26.870
SRR3591713Yellow flower34.594
SRP173429 SRR8316895Juvenile bud stage 16.068
SRR8316896Juvenile bud stage 21.839
SRR8316897Juvenile bud stage 9.381
SRR8316894Third green stage 8.724
SRR8316900Third green stage 21.844
SRR8316901Third green stage 24.010
SRR8316898Complete white stage 11.165
SRR8316899Complete white stage 42.933
SRR8316903Complete white stage 16.741
SRR8316902Silver flowering stage10.829
SRR8316904Silver flowering stage15.284
SRR8316905Silver flowering stage7.768
SRR8316906Gold flowering stage 35.308
SRR8316907Gold flowering stage 25.766
SRR8316908Gold flowering stage 35.573
SRP132670SRR6706286Control30.133
SRR6706287Light intensity 50%27.376
SRR6706288Light intensity 20%25.707
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.721
CNS0095593Slightly white alabastrum(diploid) 218.066
CNS0095594Slightly white alabastrum(diploid) 314.955
CNS0095595Whole white alabastrum(diploid) 212.885
CNS0095596Whole white alabastrum(diploid) 314.991
CNS0095597Whole white alabastrum(diploid) 418.490
CNS0095598Silvery flower (diploied) 127.727
CNS0095599Silvery flower (diploied) 224.128
CNS0095600Silvery flower (diploied) 326.441
CNS0095601Golden flower (diploid) 139.006
CNS0095602Golden flower (diploid) 236.257
CNS0095603Golden flower (diploid) 335.418
CNS0095604Slightly white alabastrum(tetraploid) 122.715
CNS0095605Slightly white alabastrum(tetraploid) 221.348
CNS0095606Slightly white alabastrum(tetraploid) 334.822
CNS0095607Whole white alabastrum(tetraploid) 115.875
CNS0095608Whole white alabastrum(tetraploid) 217.245
CNS0095609Whole white alabastrum(tetraploid) 323.288
CNS0095610Silvery flower (tetraploid) 126.614
CNS0095611Silvery flower (tetraploid) 229.719
CNS0095612Silvery flower (tetraploid) 321.031
CNS0095613Golden flower (tetraploid) 126.220
CNS0095614Golden flower (tetraploid) 226.623
CNS0095615Golden flower (tetraploid) 338.739
CRA001975CRR073297Stem 133.464
CRR073298Stem 230.604
CRR073299Stem 336.730
CRR073300Leaf 137.387
CRR073301Leaf 232.138
CRR073302Leaf 339.343
CRR073303Juvenile bud 134.815
CRR073304Juvenile bud 233.517
CRR073305Juvenile bud 328.841
CRR073306Third green 116.721
CRR073307Third green 218.943
CRR073308Third green 318.565
CRR073309Second white 118.265
CRR073310Second white 220.363
CRR073311Second white 318.648
CRR073312Silver flowering 125.596
CRR073313Silver flowering 225.021
CRR073314Silver flowering 325.068
CRR073315Gold flowering 116.441
CRR073316Gold flowering 220.965
CRR073317Gold flowering 321.621
CRR073318Tawny withering 129.628
CRR073319Tawny withering 232.990
CRR073320Tawny withering 329.809