Gene detail

Detail information of GWHGAAZE002626

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI20191.3	0	unnamed protein product [Vitis vinifera]
COG	YP_005067117.1	8E-138	uroporphyrinogen III decarboxylase
Swissprot	tr\|Q93ZB6\|DCUP1_ARATH	0	Uroporphyrinogen decarboxylase 1, chloroplastic (Precursor)
trEMBL	tr\|F6H2N2\|F6H2N2_VITVI	0	Uroporphyrinogen decarboxylase {ECO:0000256\|RuleBase:RU000554}
TAIR10	AT3G14930.2	6E-177	Uroporphyrinogen decarboxylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	83007166	83018525	+
GWHAAZE00000001	mRNA	83007166	83018525	+
GWHAAZE00000001	exon	83007166	83007515	+
GWHAAZE00000001	exon	83007599	83007714	+
GWHAAZE00000001	exon	83015799	83016181	+
GWHAAZE00000001	exon	83016298	83016582	+
GWHAAZE00000001	exon	83017119	83017354	+
GWHAAZE00000001	exon	83018110	83018525	+
GWHAAZE00000001	CDS	83007166	83007515	+
GWHAAZE00000001	CDS	83007599	83007714	+
GWHAAZE00000001	CDS	83015799	83016181	+
GWHAAZE00000001	CDS	83016298	83016582	+
GWHAAZE00000001	CDS	83017119	83017354	+
GWHAAZE00000001	CDS	83018110	83018278	+
GWHAAZE00000001	three_prime_UTR	83018279	83018525	+

Transcript Sequence
>GWHTAAZE002630 ATGTGGAGGGAAAAATCTTCTACGGAAAAGACATATTCAAGGCCAAAACACGCAGTGGATGTCAATGAAGATGAAGGGATTAGTGTCAGAGTAATGCAAGAAAATTTAGCAGACCAGCTAGATGATGATGGTGGTTTAGAGTATGAAATGTCATCATTTGTGGACAATGTATTGTCAACCGAGACAGTGACTGAGGAATCTCAAGAGAAGCTAGCAGAAGAGTTTATTCGCAGCCTATTGGAAGCAGGGGAACAATATGAGCATGCCAACATTGTGGATATACGAGAACATACCGGGGAGATTTATGCAAGGAGGCCAATTGATAGCGGCCACGATGTCACCTCGCATGAGGATGCTTGGGCTATAAATCCATATTGTGAGGGATTGGGGGTTTCGGTTTCTCGCTCTTGGATCCAGAAATCGGTTCCATTTCATGGGGATAGTCCTCTTGACGAGGATAAATCTAATCCACTTTTGGTGAAGGCTGCAAGAGGAGAACCTGTAGAACGTCCACCAGCATGGATGATGCGTCAGGCGGGAAGGTATATGGCTGTTTACAGGAAACTTGCGGAGAAACACCCATCCTTCAGAGATAGGTCGGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGGAAGCGTTCCATCCCGATGGAGTTATTATTTTCTCTGACATACTTACCCCTCTACCTGCATTTGGTGTACCATTTGACATAGAAGAAGTTAGAGGTCCTGTTATTCAGTCTCCAATTCTTTCTGAGGAGGGCTTGAAAGCCTTGCATCCAATTGACTTTGAGAAACTACAGTTTGTGGGAGAATCCCTTAGAATTTTGCGTCAGGAGGTTGGGGAACAGGCTGCAGTGTTGGGTTTTGTTGGAGCTCCCTGGACAATTGCTACTTATATAGTAGAAGGGGGCACAACTCGGACATATACAACTATAAAGAGTATGTGCCATAAAGCACCACATATATTGAAGGCTTTGCTCTCTCATTTAGCAGATGCCATATCTGAGTACGTAGTTTACCAAGTGGAGTCTGGGGCACATTGTGTTCAGATATTTGATTCATGGGGTGGACAGTTGCCCCCTGATATGTGGGAGCTCTGGTCAAAGCCTTATATTGACAAGATTGTGAGTGTAGTAAGGAAAAGATGCCCTGAAACACCACTTGTTCTGTACATTAACGGAAATGGAGGGCTGCTCGAAAGGATGAAAGGAACTGGAGTTGATGTGATTGGGCTGGACTGGACAGTGGATATGGCTGATGGGAGGAATCGGTTGGGAAATGATATTAGTATACAGGGAAATGTTGATCCTGCCTATTTGTTTTCTACTCTTCCTGCCTTGACCGATGAAATCAAAAGGGTTGTAAAGTGTGCAGGGCCCAGGGGTCACATTCTCAATTTGGGCCATGGGGTTCTAGTTGGGACACCAGAGGCAGCTGTCAGTCATTTCTTTGATGTTGCAAGAAGCTTGAAGTTTGATACGTTTGTTGAAGATCATGCAAAGGAGAAGCCTAAATTGGTAGTTTGAAGGCAATTTTTTCGAATGTCTTGGGTCCTTTTTCTGTTGTATAAATAGCCTTTTGAGTTCTAACCTAAATCCCACAGCATACTTTCTTGGACTCACTTTAGCTTGTGCATTATTGAGAGGTAAGTTGAAAGCGTTAACATTCTTTACATGCTTGTGGGTGAGCAAAAGTTAGTTTGGTGCGATTTGTGTCTGTAGATACAGATATTTTGGATGAATCGATAATTTATTTATTCTTGTTCATTGATAA

Network for GWHGAAZE002626

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01208.18	URO-D	155	493	8.70E-110

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01599	hemE, UROD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0006779	biological_process	porphyrin-containing compound biosynthetic process
GO:0004853	molecular_function	uroporphyrinogen decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.192
	SRR3591706	second leaf	106.789
	SRR3591707	mature leaf	37.035
	SRR3591708	Shoot apex	62.925
	SRR3591709	Stem	17.934
	SRR3591710	White floral bud	13.873
	SRR3591711	White flower	18.326
	SRR3591712	Green floral bud	21.004
	SRR3591713	Yellow flower	17.807
SRP173429	SRR8316895	Juvenile bud stage	16.970
	SRR8316896	Juvenile bud stage	18.469
	SRR8316897	Juvenile bud stage	11.634
	SRR8316894	Third green stage	8.228
	SRR8316900	Third green stage	28.208
	SRR8316901	Third green stage	23.992
	SRR8316898	Complete white stage	6.747
	SRR8316899	Complete white stage	23.116
	SRR8316903	Complete white stage	11.427
	SRR8316902	Silver flowering stage	5.986
	SRR8316904	Silver flowering stage	8.306
	SRR8316905	Silver flowering stage	4.477
	SRR8316906	Gold flowering stage	15.828
	SRR8316907	Gold flowering stage	15.790
	SRR8316908	Gold flowering stage	16.604
SRP132670	SRR6706286	Control	19.746
	SRR6706287	Light intensity 50%	19.906
	SRR6706288	Light intensity 20%	23.388
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.592
	CNS0095593	Slightly white alabastrum(diploid) 2	16.779
	CNS0095594	Slightly white alabastrum(diploid) 3	15.709
	CNS0095595	Whole white alabastrum(diploid) 2	19.957
	CNS0095596	Whole white alabastrum(diploid) 3	18.640
	CNS0095597	Whole white alabastrum(diploid) 4	16.874
	CNS0095598	Silvery flower (diploied) 1	18.846
	CNS0095599	Silvery flower (diploied) 2	17.512
	CNS0095600	Silvery flower (diploied) 3	15.418
	CNS0095601	Golden flower (diploid) 1	15.088
	CNS0095602	Golden flower (diploid) 2	13.718
	CNS0095603	Golden flower (diploid) 3	13.077
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.452
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.116
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.773
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.666
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.472
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.572
	CNS0095610	Silvery flower (tetraploid) 1	15.227
	CNS0095611	Silvery flower (tetraploid) 2	14.575
	CNS0095612	Silvery flower (tetraploid) 3	11.455
	CNS0095613	Golden flower (tetraploid) 1	10.930
	CNS0095614	Golden flower (tetraploid) 2	14.784
	CNS0095615	Golden flower (tetraploid) 3	11.514
CRA001975	CRR073297	Stem 1	19.300
	CRR073298	Stem 2	17.298
	CRR073299	Stem 3	16.938
	CRR073300	Leaf 1	16.050
	CRR073301	Leaf 2	13.807
	CRR073302	Leaf 3	14.227
	CRR073303	Juvenile bud 1	14.641
	CRR073304	Juvenile bud 2	13.884
	CRR073305	Juvenile bud 3	11.664
	CRR073306	Third green 1	5.531
	CRR073307	Third green 2	4.190
	CRR073308	Third green 3	4.306
	CRR073309	Second white 1	9.067
	CRR073310	Second white 2	7.619
	CRR073311	Second white 3	5.579
	CRR073312	Silver flowering 1	7.930
	CRR073313	Silver flowering 2	5.756
	CRR073314	Silver flowering 3	6.039
	CRR073315	Gold flowering 1	35.311
	CRR073316	Gold flowering 2	39.547
	CRR073317	Gold flowering 3	29.979
	CRR073318	Tawny withering 1	9.320
	CRR073319	Tawny withering 2	8.896
	CRR073320	Tawny withering 3	12.142