Gene detail

Detail information of GWHGAAZE002629

Functional Annotation

Database	Orthologs	Annotation
Nr	Q9FV65.1CAPPC_FLATR	RecName: Full=Phosphoenolpyruvate carboxylase 2; Short=PEPC 2; Short=PEPCase 2; Short=ppcC [Flaveria trinervia]
COG	YP_008045770.1	phosphoenolpyruvate carboxylase
Swissprot	tr\|Q9FV65\|CAPPC_FLATR	Phosphoenolpyruvate carboxylase 2
trEMBL	tr\|A0A061F8Q3\|A0A061F8Q3_THECC	Phosphoenolpyruvate carboxylase 3 isoform 1 {ECO:0000313\|EMBL:EOY13253.1}
TAIR10	AT3G14940.1	phosphoenolpyruvate carboxylase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	83100785	83107720	+
GWHAAZE00000001	mRNA	83100785	83107720	+
GWHAAZE00000001	exon	83100785	83100952	+
GWHAAZE00000001	exon	83101761	83102152	+
GWHAAZE00000001	exon	83102477	83102561	+
GWHAAZE00000001	exon	83103333	83103555	+
GWHAAZE00000001	exon	83103716	83103819	+
GWHAAZE00000001	exon	83103929	83104022	+
GWHAAZE00000001	exon	83104149	83104303	+
GWHAAZE00000001	exon	83104440	83105438	+
GWHAAZE00000001	exon	83105733	83106119	+
GWHAAZE00000001	exon	83107424	83107720	+
GWHAAZE00000001	CDS	83100785	83100952	+
GWHAAZE00000001	CDS	83101761	83102152	+
GWHAAZE00000001	CDS	83102477	83102561	+
GWHAAZE00000001	CDS	83103333	83103555	+
GWHAAZE00000001	CDS	83103716	83103819	+
GWHAAZE00000001	CDS	83103929	83104022	+
GWHAAZE00000001	CDS	83104149	83104303	+
GWHAAZE00000001	CDS	83104440	83105438	+
GWHAAZE00000001	CDS	83105733	83106119	+
GWHAAZE00000001	CDS	83107424	83107720	+

Transcript Sequence
>GWHTAAZE002633 ATGGCGAATCGGAACTTGGAGAAATTGGCGTCGATCGATGCCCAATTGAGGCTATTGGTACCCGGAAAAGTATCAGAAGATGATAAGCTTGTGGAGTATGATGCTCTTTTGTTGGATCGGTTTCTTGATATTCTTCAGGATTTACATGGCGAGGATCTCAAGGAAACGGTTCAAGAGTGTTATGAGCTTTCAGCGGAGTATGAAGGAAAGCGAGACCCTAAGAAGCTCGAAGAGCTTGGAAGTGTATTAACAAGTCTGGATCCAGGTGACTCTATTGTCATTGCAAAAGCTTTCTCTCACATGCTTAATTTGGCCAATTTAGCTGAGGAGGTTCAGATTGCTCACCGCCGACGCAACAAATTGAAGAAGGGGGGATTCACCGACGAGAGCAATGCAACCACCGAATCAGATATTGAAGAAACACTCAAGAAACTCGTGGGGCAGCTGAAGAAATCTCCCGAAGAAGTTTTTGATGCACTCAAGAATCAAACTGTTGATCTTGTCTTCACTGCTCATCCAACTCAATCGGTCCGTAGATCTTTGCTTCAAAAGCATGGAAGGATAAGGACTTGCTTAGCCCAGTTAAATGCCAAAGATATTACTCCTGATGATAAGCAGGAACTTGACGAGGCTTTACAGAGAGAAATTCAAGCTGCTTTCCGTACTGACGAGATCCGGAGGACTCCACCAACACCACAAGATGAAATGAGAGCTGGAATGAGCTACTTTCACGAAACAATATGGAAGGGAGTTCCTAAATTTTTACGCCGTGTTGACACAGCTCTCAAGAATATAGGAATAAATGAGCGCGTGCCATATAATGCCCCTCTTATTCAGTTCTCCTCCTGGATGGGCGGTGATCGTGATGGTAATCCAAGGGTAACTCCTGAGGTCACCAGGGACGTTTGCTTGTTGGCCAGAATGATGGCTGCTAACTTGTACTTCTCCCAGATAGAAGATCTCATGTTTGAGATGTCTATGTGGCGTTGTAGTGATGAGCTTCGTGTCCGGGCAGACGAACTCCACAGATCAGCGACTGCGAGGAGAGATGCAAAACACTACATAGAGTTCTGGAAACAGGTGCCCGTAAGTGAACCTTATCGTGTTATTCTTGGTGATGTGAGAGATAAGTTGTATCATACCCGTGAACGTTCTCGTCACTTGTTAGCCCATGGCACATCTGACATCCCAGAGGAAGCAACTTACACCGATGTTGAGCAGTTCTTGCAACCTCTTGAACTATGCTACCGGTCTCTATGCGCTTGTGGGGATCGGCCCATTGCTGATGGAAGCCTTCTCGATTTCCTAAGGCAAGTTTCCACCTTTGGACTTTCGCTTGTAAGACTCGATATAAGGCAAGAGTCAGAGCGACACACTGATGTCCTTGATGCCATCACCAAGCATTTGGAACTCGGCTCTTATCGAGAGTGGTCGGAAGAACGCCGCCAAGAATGGCTTTTATCTGAACTCAGCGGCAAACGCCCACTATTCGGTCCTGACCTTCCAAAAACTGAGGAAATTGCTGATGTACTCGACACTTTCCATGTCATAGCCGAACTCCCATCGGATTGCTTTGGAGCTTACATCATCTCAATGGCCACATCACCGTCCGATGTACTCGCGGTCGAGCTTTTACAACGCGAGTGTCACGTGAAGCAACCGTTAAGAGTTGTTCCGCTTTTTGAGAAGCTTGCAGATCTCGATGCTGCTCCTGCCGCAGTGGCCCGCCTCTTCTCTATAGATTGGTATAAAAACAGGATCAATGGCAAGCAAGAGGTCATGATCGGATACTCGGATTCCGGGAAAGATGCTGGTCGGCTATCGGCGGCTTGGCAATTGTACAAGGCTCAAGAGGAGCTTATAAAAGTTGCAAAGCAATTCGGAGTGAAGCTAACTATGTTCCACGGTCGAGGTGGGACTGTTGGGAGAGGAGGTGGCCCCACTCATCTTGCTATATTGTCTCAACCGCCTGAGACAATTCACGGGTCGCTCCGTGTTACAGTACAAGGTGAAGTTATAGAACAATCGTTTGGGGAGGAACACTTGTGTTTTAGAACCCTCCAGCGTTTCTCAGCTGCTACACTTGAGCATGGTATGTCTCCCCCAGTCTCACCAAAACCAGAATGGCGAGCGCTTATGGATGAAATGGCCATGATTGCTACAGAGGAGTACCGTTCAATAGTTTTTAAAGAACCCCGGTTTGTGGAGTATTTCCGCCTTGCAACACCAGAGATGGAGTATGGACGAATGAATATTGGGAGCCGACCGTCGAAGCGAAAGCCGAGCGGGGGGATTGAATCGCTCAGAGCTATCCCTTGGATCTTTGCATGGACCCAAACCAGGTTCCATCTCCCTGTTTGGCTTGGGTTTGGGGCAGCTTTCAAACAGGCAATCGATAAGGACATTAAGAATCTGAAGATGCTGCAGGAAATGTACAATGAATGGCCCTTCTTTAGGGTCACTATCGACTTGATTGAGATGGTGTTTGCCAAGGGTGACCCCAGTATTTCTACTTTGAACGACAAGCTCCTCGTTTCCCAAGATTTGTGGTCGTTCGGAGAGCAGTTGAGGTCCAAGTATGTGGAAACAAAGAATCTTCTACTCCAGATTGCTGGGCACAAGGATCTACTTGAAGGAGACCCCTACTTGAAGCAGAGACTTAGGCTGCGTGATTCCTACATCACGACATTGAATGTATGCCAGGCGTACACACTAAAAAGGATCAGGGACCCAGACTATCAGGTGCAGTTGAGGCCGCACATTTCAAAGGAGTACATGGAAGCGAGCAAACGAGCCGCTGAGCTGGTTAAGCTGAACCCCACGAGCGAGTATGCCCCTGGCCTAGAGGACACCCTCATTTTGACCATGAAGGGTATTGCCGCAGGGATGCAGAACACCGGTTAA

Network for GWHGAAZE002629

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00311.18	PEPcase	163	967	1.50E-302

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01595	ppc	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710
		Carbon fixation pathways in prokaryotes	map00720
		Methane metabolism	map00680

Gene Ontology

GO term	Ontology	Name
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0015977	biological_process	carbon fixation
GO:0008964	molecular_function	phosphoenolpyruvate carboxylase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	217.608
	SRR3591706	second leaf	84.499
	SRR3591707	mature leaf	87.099
	SRR3591708	Shoot apex	74.847
	SRR3591709	Stem	206.489
	SRR3591710	White floral bud	110.481
	SRR3591711	White flower	197.685
	SRR3591712	Green floral bud	162.228
	SRR3591713	Yellow flower	155.439
SRP173429	SRR8316895	Juvenile bud stage	62.814
	SRR8316896	Juvenile bud stage	103.441
	SRR8316897	Juvenile bud stage	48.066
	SRR8316894	Third green stage	66.152
	SRR8316900	Third green stage	167.366
	SRR8316901	Third green stage	162.333
	SRR8316898	Complete white stage	34.796
	SRR8316899	Complete white stage	158.904
	SRR8316903	Complete white stage	47.983
	SRR8316902	Silver flowering stage	53.151
	SRR8316904	Silver flowering stage	69.960
	SRR8316905	Silver flowering stage	40.308
	SRR8316906	Gold flowering stage	96.774
	SRR8316907	Gold flowering stage	108.957
	SRR8316908	Gold flowering stage	130.849
SRP132670	SRR6706286	Control	142.215
	SRR6706287	Light intensity 50%	152.092
	SRR6706288	Light intensity 20%	162.372
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	73.141
	CNS0095593	Slightly white alabastrum(diploid) 2	68.344
	CNS0095594	Slightly white alabastrum(diploid) 3	73.539
	CNS0095595	Whole white alabastrum(diploid) 2	82.542
	CNS0095596	Whole white alabastrum(diploid) 3	90.456
	CNS0095597	Whole white alabastrum(diploid) 4	77.124
	CNS0095598	Silvery flower (diploied) 1	50.434
	CNS0095599	Silvery flower (diploied) 2	54.361
	CNS0095600	Silvery flower (diploied) 3	133.967
	CNS0095601	Golden flower (diploid) 1	55.626
	CNS0095602	Golden flower (diploid) 2	123.553
	CNS0095603	Golden flower (diploid) 3	119.323
	CNS0095604	Slightly white alabastrum(tetraploid) 1	106.539
	CNS0095605	Slightly white alabastrum(tetraploid) 2	90.089
	CNS0095606	Slightly white alabastrum(tetraploid) 3	125.044
	CNS0095607	Whole white alabastrum(tetraploid) 1	86.135
	CNS0095608	Whole white alabastrum(tetraploid) 2	87.851
	CNS0095609	Whole white alabastrum(tetraploid) 3	153.567
	CNS0095610	Silvery flower (tetraploid) 1	117.478
	CNS0095611	Silvery flower (tetraploid) 2	131.562
	CNS0095612	Silvery flower (tetraploid) 3	67.361
	CNS0095613	Golden flower (tetraploid) 1	36.295
	CNS0095614	Golden flower (tetraploid) 2	82.361
	CNS0095615	Golden flower (tetraploid) 3	47.136
CRA001975	CRR073297	Stem 1	86.366
	CRR073298	Stem 2	95.645
	CRR073299	Stem 3	90.676
	CRR073300	Leaf 1	133.567
	CRR073301	Leaf 2	124.619
	CRR073302	Leaf 3	128.035
	CRR073303	Juvenile bud 1	142.905
	CRR073304	Juvenile bud 2	136.014
	CRR073305	Juvenile bud 3	176.191
	CRR073306	Third green 1	49.019
	CRR073307	Third green 2	32.599
	CRR073308	Third green 3	36.252
	CRR073309	Second white 1	56.976
	CRR073310	Second white 2	27.571
	CRR073311	Second white 3	26.006
	CRR073312	Silver flowering 1	34.463
	CRR073313	Silver flowering 2	34.788
	CRR073314	Silver flowering 3	30.312
	CRR073315	Gold flowering 1	26.589
	CRR073316	Gold flowering 2	37.663
	CRR073317	Gold flowering 3	33.591
	CRR073318	Tawny withering 1	67.572
	CRR073319	Tawny withering 2	48.751
	CRR073320	Tawny withering 3	52.233