Gene detail

Detail information of GWHGAAZE002659

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05971.1	2.0738E-158	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9ZQF9\|MBR1_ARATH	3E-36	E3 ubiquitin-protein ligase MBR1
trEMBL	tr\|A0A068UBU5\|A0A068UBU5_COFCA	8E-159	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP05971.1}
TAIR10	AT1G53190.2	5E-56	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	83607192	83611307	-
GWHAAZE00000001	mRNA	83607192	83611307	-
GWHAAZE00000001	exon	83607192	83607338	-
GWHAAZE00000001	exon	83608842	83608997	-
GWHAAZE00000001	exon	83609167	83609265	-
GWHAAZE00000001	exon	83609724	83610103	-
GWHAAZE00000001	exon	83610626	83611307	-
GWHAAZE00000001	CDS	83610626	83611307	-
GWHAAZE00000001	CDS	83609724	83610103	-
GWHAAZE00000001	CDS	83609167	83609265	-
GWHAAZE00000001	CDS	83608842	83608997	-
GWHAAZE00000001	CDS	83607192	83607338	-

Transcript Sequence
>GWHTAAZE002663 ATGGGGCAACGGAATATACTCTACACTAGCCCGATGATTGGCTTGGAAATGGATCCACAAGGAGGGCAAGGCCATCTCCATCCTGAGCCTTGCATTCTTTACAGAAATATAGCAAGTTTTCCACAGCCTAATGTTCATACAATATTACCACCTCAAGTAAACAGAACTATCTCGGAGCATCAGGGCCCTTTATCCTATGGGGTTAATCAGTACAATGGTGTTCATCATAATCACCCAGGCGGTAATATCAACTTATCTGCGCCATCCAATCACTACAACATGTTCATGAACCCTTCATCGAGTACCCGTGTTTTCCCTATCCCACTAAGTCACGGGCCCCATGATCCATTGCCATTTTCTAGTAATCATGGGATCATTGAAGTTGATGGTTTTGGAGGTGCATTTAAGAGAAAGAATGCTGAGGGGTATCCTGGTAATTTCCAGTTTTGTTTTCCTTCAGTGGGGTCTAGTTCTTCAGGTGCCCCTACGAGTGCAAGGCCTCTTGAATCTGATGTTGCTGTGATGGATGGTGGTTCTTTTCCTCTCCCCAAGTATAGATCGGGCGTTGATACTGTATTGGCGCACAACAGTAACCGTATGATTCAAGGAAACCATCTGGGTCAACCCTATCAAACAGCTGGTGCTCCTTGGAATCAGGCACCTGCTTTACCCTATCTGCATGGAAGCATGAATGGAGGGTGTATGGAGACTGCCAATATGTGTATACAGGGCACACCATTTTTGCATCCTCCTCCTCCTATACCCCAAGGGCACCCCAATCTTCATCATATACCTCCACCACCTATGCACGGAGCTCGAGGCCCCAATATTGATTTCCATTCTCAAATTGCAACATCTTCTTCACGCAGATTCCCAACAAATAGCACCTCCCACACTAGTATGAATCCTTTTCAGGATGGTGGGGTAGAGGTAGGACCTAGATTTGTGGGACCTGTTCCACCAAACAGCCTGAGGATATACCGGCCTCCTCGAAGGGACATGATGCTTGATGCAATGCCAAGGCAGCGGAACCTTCCTCACTTGAGGGTTTTGCCAGAAGATGGAGTTGCCATACTAGATATTTCAGGCTATCATGAAGTAGGAGATTCCATTGATCATCACAGAGATATGAGACTGGATATTGACCACATGTCTTATGAGGAGCTTCTTGCCCTGGGGGAACAGATTGGGAGTGTGGGCACTGGCTTGTCTGAAGAAATCATTACGAGGCATCTAAAAACAAGAATGTTTGAGTCATCATCATACACATCTTATTCTAATCTGGAAGAGGCAGAACTTTCCTGCGTCATTTGTCAGGGTGAGTACGAGGAACAAGAGAGTATTGGAGTACTAAATTGCGGGCACAAGTACCATGTAGACTGCATCAAAAAGTGGCTGCTTGTGAAGAACATTTGCCCCATTTGCAAATCCTCAGCTTTTGCCCTTTCAGAAAAGGACTCATGA

Network for GWHGAAZE002659

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	434	476	2.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.625
	SRR3591706	second leaf	13.262
	SRR3591707	mature leaf	20.417
	SRR3591708	Shoot apex	13.115
	SRR3591709	Stem	32.303
	SRR3591710	White floral bud	34.892
	SRR3591711	White flower	43.193
	SRR3591712	Green floral bud	17.504
	SRR3591713	Yellow flower	41.766
SRP173429	SRR8316895	Juvenile bud stage	7.329
	SRR8316896	Juvenile bud stage	10.283
	SRR8316897	Juvenile bud stage	3.951
	SRR8316894	Third green stage	4.991
	SRR8316900	Third green stage	13.847
	SRR8316901	Third green stage	15.047
	SRR8316898	Complete white stage	20.783
	SRR8316899	Complete white stage	29.444
	SRR8316903	Complete white stage	29.868
	SRR8316902	Silver flowering stage	19.248
	SRR8316904	Silver flowering stage	29.194
	SRR8316905	Silver flowering stage	14.034
	SRR8316906	Gold flowering stage	49.752
	SRR8316907	Gold flowering stage	54.542
	SRR8316908	Gold flowering stage	46.061
SRP132670	SRR6706286	Control	28.329
	SRR6706287	Light intensity 50%	28.129
	SRR6706288	Light intensity 20%	25.109
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.614
	CNS0095593	Slightly white alabastrum(diploid) 2	7.696
	CNS0095594	Slightly white alabastrum(diploid) 3	6.438
	CNS0095595	Whole white alabastrum(diploid) 2	5.557
	CNS0095596	Whole white alabastrum(diploid) 3	5.602
	CNS0095597	Whole white alabastrum(diploid) 4	7.453
	CNS0095598	Silvery flower (diploied) 1	14.041
	CNS0095599	Silvery flower (diploied) 2	11.616
	CNS0095600	Silvery flower (diploied) 3	30.198
	CNS0095601	Golden flower (diploid) 1	11.598
	CNS0095602	Golden flower (diploid) 2	28.052
	CNS0095603	Golden flower (diploid) 3	29.305
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.765
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.979
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.453
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.371
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.687
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.585
	CNS0095610	Silvery flower (tetraploid) 1	30.004
	CNS0095611	Silvery flower (tetraploid) 2	31.549
	CNS0095612	Silvery flower (tetraploid) 3	37.530
	CNS0095613	Golden flower (tetraploid) 1	19.128
	CNS0095614	Golden flower (tetraploid) 2	27.367
	CNS0095615	Golden flower (tetraploid) 3	43.585
CRA001975	CRR073297	Stem 1	11.731
	CRR073298	Stem 2	10.606
	CRR073299	Stem 3	8.875
	CRR073300	Leaf 1	15.919
	CRR073301	Leaf 2	13.988
	CRR073302	Leaf 3	9.773
	CRR073303	Juvenile bud 1	10.232
	CRR073304	Juvenile bud 2	12.293
	CRR073305	Juvenile bud 3	14.296
	CRR073306	Third green 1	26.115
	CRR073307	Third green 2	21.311
	CRR073308	Third green 3	23.675
	CRR073309	Second white 1	17.433
	CRR073310	Second white 2	17.070
	CRR073311	Second white 3	15.946
	CRR073312	Silver flowering 1	12.486
	CRR073313	Silver flowering 2	6.885
	CRR073314	Silver flowering 3	11.350
	CRR073315	Gold flowering 1	6.203
	CRR073316	Gold flowering 2	9.392
	CRR073317	Gold flowering 3	5.183
	CRR073318	Tawny withering 1	11.765
	CRR073319	Tawny withering 2	7.677
	CRR073320	Tawny withering 3	8.956