Gene detail

Detail information of GWHGAAZE002688

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009604692.1	PREDICTED: xylosyltransferase 2-like [Nicotiana tomentosiformis]
trEMBL	tr\|A0A068UBI7\|A0A068UBI7_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP05925.1}
TAIR10	AT3G15350.2	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	84251542	84254147	+
GWHAAZE00000001	mRNA	84251542	84254147	+
GWHAAZE00000001	exon	84251542	84252236	+
GWHAAZE00000001	exon	84252341	84252416	+
GWHAAZE00000001	exon	84252510	84252625	+
GWHAAZE00000001	exon	84253648	84254147	+
GWHAAZE00000001	five_prime_UTR	84251542	84251665	+
GWHAAZE00000001	CDS	84251666	84252236	+
GWHAAZE00000001	CDS	84252341	84252416	+
GWHAAZE00000001	CDS	84252510	84252625	+
GWHAAZE00000001	CDS	84253648	84254147	+

Transcript Sequence
>GWHTAAZE002692 AGGAGCAAGTTCAAATTGGGGATTTCATTTGAAGATTACAAATTGATGAAGAGATTGAGGGAATTTGGGAGTAGTATGACGAGGAGGGAATTTTGGTGGAATTCATGATGAATTTTTTTTGTTAATGGGGTCCCTAAACATGGAGAAGAAATGGGTATTTCCTCTTGTTATAAGTTCCCTTGTATGTGTTTTCCTTCTTGCAACCTCCTTCAATATGGGACTTGTTTCTTCTTTGCACACTATCAATTCAATCTTCGCCATTTTCCCCTCCCGTGTTGTTACTAACCAAACCAACCCCTATTTTGCCGAAACAAAGCTAGTTGAGCAATCTAGACCTACACCCCCTGCTGTTCCTCGTTTTGCCTATTTGGTTTCAGGGTCAAAAGGGGATTTAGAAAAGCTTTGGAGGACTCTTCGTGCACTTTATCATCCACGTAATCAATACGTTGTTCATCTGGACCTAGAATCTCCGGCCGAGGAGAGAATGGAGCTCACTTCACGAGTGGAAAAGGATCCGGTTTTTGCTAGTGTTGGGAATGTATTTATGATTACCAAAGCTAATATGGTTACGTACAGAGGACCCACAATGGTTTCTAATACTCTTCATGCCTGTGCCATTCTTCTCAAGAGAAGTAAGGATTGGGATTGGTTTATTAACCTCAGTGCTTCGGATTACCCTTTGGTGACTCAAGACGATCTTCTTTACTCGTTTATTGAATTAAAGCGGGACCTTAATTTCATTGAACACACGAGCCACTTAGGCTGGAAAGAGGATAAAAGGGCAATGCCATTGATTGTAGACCCCGGGCTCTATCAAACGAACAAGTCAGATATATTTTGGGTCAAACCGAAGAGAAGTTTGCCCTCAGCCTTTAAATTGTTTACTGGTTCAGCATGGATGATCCTCTCACGTTCATTCGTCGAGTACTGCATATGGGGCTGGGATAATCTTCCAAGAACTCTACTCATGTACTACTCGAATTTCTTATCGTCACCCGAGGGCTACTTCCAGACAGTTGTGTGCAATGCACCCGAATTTGTCAAAACTCTCATCAACCACGACATGCACTACATTTCTTGGGACGAACCCCCAAAACAGCACCCTCACATCCTCTCCATCAATGACACAAGCAAAATGATCGGTAGTGGTGCTCCTTTTGCACGCAAATTCAAGCAAGATGATCCCGTTTTGGATAAGATTGATAAGGAGTATCTTGGCCGGAGAAAAGGGAGCTTCACGCCTGGTGGGTGGTGCTCCGGCCAGCCACCTTGTTCAAAGGTTGGGGAACCCACCAGGCTCAGTCCAGGTCCCGGTTCTCAAAGGCTTCGTCGACTTATAGGTAGGTTAGTTTTGTCAGCAAAGTTTAGTCAGAATCAGTGTGAGTAG

Network for GWHGAAZE002688

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0178

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02485.22	Branch	79	338	6.20E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0008375	molecular_function	acetylglucosaminyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.123
	SRR3591706	second leaf	18.846
	SRR3591707	mature leaf	21.744
	SRR3591708	Shoot apex	26.553
	SRR3591709	Stem	34.944
	SRR3591710	White floral bud	41.103
	SRR3591711	White flower	37.313
	SRR3591712	Green floral bud	45.736
	SRR3591713	Yellow flower	27.745
SRP173429	SRR8316895	Juvenile bud stage	38.793
	SRR8316896	Juvenile bud stage	53.053
	SRR8316897	Juvenile bud stage	26.034
	SRR8316894	Third green stage	19.987
	SRR8316900	Third green stage	67.007
	SRR8316901	Third green stage	66.326
	SRR8316898	Complete white stage	20.750
	SRR8316899	Complete white stage	75.941
	SRR8316903	Complete white stage	33.789
	SRR8316902	Silver flowering stage	14.174
	SRR8316904	Silver flowering stage	20.179
	SRR8316905	Silver flowering stage	8.032
	SRR8316906	Gold flowering stage	29.439
	SRR8316907	Gold flowering stage	30.930
	SRR8316908	Gold flowering stage	29.427
SRP132670	SRR6706286	Control	31.575
	SRR6706287	Light intensity 50%	35.432
	SRR6706288	Light intensity 20%	35.190
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.779
	CNS0095593	Slightly white alabastrum(diploid) 2	50.025
	CNS0095594	Slightly white alabastrum(diploid) 3	42.920
	CNS0095595	Whole white alabastrum(diploid) 2	45.879
	CNS0095596	Whole white alabastrum(diploid) 3	41.006
	CNS0095597	Whole white alabastrum(diploid) 4	43.718
	CNS0095598	Silvery flower (diploied) 1	42.576
	CNS0095599	Silvery flower (diploied) 2	40.181
	CNS0095600	Silvery flower (diploied) 3	32.778
	CNS0095601	Golden flower (diploid) 1	39.610
	CNS0095602	Golden flower (diploid) 2	34.651
	CNS0095603	Golden flower (diploid) 3	33.289
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.380
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.302
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.845
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.709
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.680
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.382
	CNS0095610	Silvery flower (tetraploid) 1	32.534
	CNS0095611	Silvery flower (tetraploid) 2	27.292
	CNS0095612	Silvery flower (tetraploid) 3	41.029
	CNS0095613	Golden flower (tetraploid) 1	15.584
	CNS0095614	Golden flower (tetraploid) 2	25.186
	CNS0095615	Golden flower (tetraploid) 3	11.077
CRA001975	CRR073297	Stem 1	36.413
	CRR073298	Stem 2	28.929
	CRR073299	Stem 3	18.005
	CRR073300	Leaf 1	40.621
	CRR073301	Leaf 2	35.563
	CRR073302	Leaf 3	19.992
	CRR073303	Juvenile bud 1	23.135
	CRR073304	Juvenile bud 2	20.369
	CRR073305	Juvenile bud 3	20.281
	CRR073306	Third green 1	9.660
	CRR073307	Third green 2	8.115
	CRR073308	Third green 3	9.001
	CRR073309	Second white 1	9.478
	CRR073310	Second white 2	9.317
	CRR073311	Second white 3	10.794
	CRR073312	Silver flowering 1	11.431
	CRR073313	Silver flowering 2	12.578
	CRR073314	Silver flowering 3	11.153
	CRR073315	Gold flowering 1	7.992
	CRR073316	Gold flowering 2	14.811
	CRR073317	Gold flowering 3	8.123
	CRR073318	Tawny withering 1	29.121
	CRR073319	Tawny withering 2	39.444
	CRR073320	Tawny withering 3	33.202