Gene detail

Detail information of GWHGAAZE002689

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011098302.1	0	PREDICTED: protein SPA1-RELATED 4-like isoform X1 [Sesamum indicum]
COG	YP_007121393.1	3E-17	WD40 repeat-containing protein
Swissprot	tr\|Q9LJR3\|SPA3_ARATH	0	Protein SPA1-RELATED 3
trEMBL	tr\|A0A061F802\|A0A061F802_THECC	0	SPA1-related 3 isoform 3 {ECO:0000313\|EMBL:EOY13013.1}
TAIR10	AT3G15354.1	0	SPA1-related 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	84271704	84278167	-
GWHAAZE00000001	mRNA	84271704	84278167	-
GWHAAZE00000001	exon	84271704	84271892	-
GWHAAZE00000001	exon	84272278	84272421	-
GWHAAZE00000001	exon	84272565	84272624	-
GWHAAZE00000001	exon	84273251	84273562	-
GWHAAZE00000001	exon	84273681	84273848	-
GWHAAZE00000001	exon	84274201	84275146	-
GWHAAZE00000001	exon	84277093	84277250	-
GWHAAZE00000001	exon	84277391	84278167	-
GWHAAZE00000001	CDS	84277391	84278167	-
GWHAAZE00000001	CDS	84277093	84277250	-
GWHAAZE00000001	CDS	84274201	84275146	-
GWHAAZE00000001	CDS	84273681	84273848	-
GWHAAZE00000001	CDS	84273251	84273562	-
GWHAAZE00000001	CDS	84272565	84272624	-
GWHAAZE00000001	CDS	84272278	84272421	-
GWHAAZE00000001	CDS	84271704	84271892	-

Transcript Sequence
>GWHTAAZE002693 ATGACAATGGATGGTTCATCCGAGTCCGGTTGGCAGAGGTCTGACGGTTCTAGGGGTTTAAATTCATCAGGGGTCTCAGATAGAAACCCTAGATTGATTGGTGCCGACTCCACCAGGTTCCCAGGCGATACGGCACATGATGGTTTATCAAGGGTTTTCGAGGATGGGAGTGGGGAGGCAGTTGAACGTGCCATAGAATGCAGTGATGTTAGCTTGAGACAGTGGCTCGACAACCCAGAGAGAGCTGTTGATGCCCTTGAATGTTTGCACATATTTAGTCAAATAGTTGAGATTGTGAACCTTGCACACTCTCAAGGAATTGTTGTTCATAATGTGAGACCCTCCTGTTTTGTCATGTCATCGTTCAACCGTGTTTCTTTTATTGAATCTGCCTCTTGCTCGGATTCGGGTTCTGATTCGTATGAAGATGTGGCCAACAGCCAAACAGCCGAATTTAAGGGTCCCCAAGAATTAAATCGAAGTGAAAGTCAGTTGGGAACAGAGGATTCTCAGCCAGAGGTAAATCCTAGAAATGCTGCACAAATGGTGTCAGAAACCAGTTGCTTGCAGTCAAATTCAGATGTGCATGTATCATTAGAAGCTAGTAATGTTTTAGAAGCTAGTAATGTAGACCAAGCGGAAGAAAAGGAGCATCCCTTTCCAATGAAACAGATATTGCTCATGGAAACTGCCTGGTATACTAGTCCGGAAGAGGTTGATGGTGCTCCAAGTTCTTGTGCTTCTGATATTTATCGACTAGGAGTCCTCCTCTTTGAGTTATTCTGCACATTCAGTTCGGCAGAAGAAAAGAGCACGACTATGTCTAGCCTGAGACATCGTCTCCTTCCTCCTCAGTTACTCCTGAAGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTACTGCACCCAGAGCCAACTAGTAGGCCAAAAATGGGTGAATTGGTGCAAAGTGAGTTCCTTAGTGCACCTAGAGAGAACATAGAAGAACGTGAGGCAGCCATAGATCTCAGAGAAAGGATAGAGGAGCAGGAGCTGCTTCTAGAATTCCTTTTATTGATACAACAAAGAAAACAAGAAGCTGCGGATAACTTGCACGAGACCATTTCATTTCTCTCTTCTGATATAGAAGAAGTTACAAAGCTGCAAACAGTCATTAAGAAAAAAAGCGGCTCTGGTCAAAATCTGGGAGATTCAGCGTTGGGCCCCCCTATTGACAATGATGATTCTGGTAACTCGGGGTCCAGAAAAAGAGTCAGACCAGGCCTTCAGATTCAGAGTCCCAAAGAATTTGATGGTCGGCAAGATGAGCGCCATAATTCAGATGCACCTGACAATAATGAAGGGAAAATTATTTCCCAAAGTTCTCGTTTGATGAAGAATTTCAAGAAACTAGAGTCGGCTTACTTTCTAACAAGGAGGAGAGCTGCCAAACCGACCGGGAAAACATTGACTAGACATGCTCCAATTAGTAGTGATGGTAGGGGGTCTATAACAGAAAGAAGTTCTGTCAATAACTTATCTTTGAAAGAACGATATAGTGAGAATAGACAAAACGGATGGATAAATTCGTTTCTTGATGGTTTGTGCAAGTATCTGTCTTTCAGCAAGATAAAAGTGAAGGCAGACTTGAAGCAAGGGGATCTTTTAAATTCTTCCAACCTTGTTTGTTCTCTCAGTTTTGACCGTGATGGGGAATTTTTTGCGACAGCTGGTGTAAATAAGAAGATCAAAGTATTTGAATATGACACAATCTCGAAAGAAGATCGTGATATTCATTATCCGGTTGTTGAAATGTCTAGTAGGTCAAAGCTAAGCAGTATCTGTTGGAATGGATATATCAAAAGCCAGATCGCCTCGAGTAACTTTGATGGTGTTGTACAGGTATGGGATGTCACAAGAAGCCAAGTATTTTTGGAAATGAGAGAGCATGAGAGGCGGGTCTGGTCCGTTGACTTCTCATTGGCAGATCCAACATTGTTGGCCAGCGGGAGTGATGATCGTTCTGTCAAGCTTTGGAATATCAATCAGGCAATTCTATTTTTGCACTTGGGAGTTAGTGTGGGTACCATCAAAACAATTGCCAATGTCTGCTGCGTTCAGTTCCCCACTGATTCTAGCAATTCCCTTGCTTTTGGTTCGGCGGATCATAATGTTTATTACTATGATCTTCGTAATTCAAAGATGCCCCTCTGCACATTGGTTGGCCACAACAAAACTGTGAGCTACGTCAAGTTCATTGATTCAACGAATCTTGTGTCTGCGTCTACAGATAACACATTAAAGCTTTGGGATTTGTCAATGTGCTCATCCAGAGTTCTTGATTGTCCTCTTCAGTCATTCACAGGCCACATGAATGTAAAGAACTTTGTTGGTTTATCGGTGTCTGAGGGCTACATTGCAACAGGCTCAGAAACCAATGAGGGTGGTTATGTGGATGTCAATGCAATATTAGAATATGAGGGTGTGTTTATGGTAGTTTGGGAAAATAATTTTGAAGGATACACAGGAGATGGCAAGTGGACCATCGAGCTGAATTGCTGTATTTTTAGCGTGCCATTTCCCCATGTTTACATCTACCACAAAGCTTTCCCCATGCCTGCTTTGTCATTTAAATTCAATACCACAGACCCACTCTCCGGAGATGAAGTGGACGACTCTGCCCAATTCATTTCATCGGTGTGCTGGCGTGGTCAATCTTCCACCTTAGTTGCTGCAAATTCTATGGGAAATATCAAACTTTTGGAGATGGTTTAA

Network for GWHGAAZE002689

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	640	673	0.00066
PF00400.33	WD40	729	764	0.0021

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.113
	SRR3591706	second leaf	29.452
	SRR3591707	mature leaf	54.850
	SRR3591708	Shoot apex	22.832
	SRR3591709	Stem	31.776
	SRR3591710	White floral bud	20.363
	SRR3591711	White flower	37.315
	SRR3591712	Green floral bud	17.544
	SRR3591713	Yellow flower	18.449
SRP173429	SRR8316895	Juvenile bud stage	12.532
	SRR8316896	Juvenile bud stage	15.094
	SRR8316897	Juvenile bud stage	7.435
	SRR8316894	Third green stage	9.219
	SRR8316900	Third green stage	21.453
	SRR8316901	Third green stage	18.468
	SRR8316898	Complete white stage	10.750
	SRR8316899	Complete white stage	37.230
	SRR8316903	Complete white stage	17.491
	SRR8316902	Silver flowering stage	12.446
	SRR8316904	Silver flowering stage	19.864
	SRR8316905	Silver flowering stage	8.408
	SRR8316906	Gold flowering stage	30.654
	SRR8316907	Gold flowering stage	21.654
	SRR8316908	Gold flowering stage	28.290
SRP132670	SRR6706286	Control	29.624
	SRR6706287	Light intensity 50%	28.792
	SRR6706288	Light intensity 20%	26.964
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.371
	CNS0095593	Slightly white alabastrum(diploid) 2	9.289
	CNS0095594	Slightly white alabastrum(diploid) 3	8.266
	CNS0095595	Whole white alabastrum(diploid) 2	6.444
	CNS0095596	Whole white alabastrum(diploid) 3	5.623
	CNS0095597	Whole white alabastrum(diploid) 4	6.293
	CNS0095598	Silvery flower (diploied) 1	26.080
	CNS0095599	Silvery flower (diploied) 2	17.214
	CNS0095600	Silvery flower (diploied) 3	32.168
	CNS0095601	Golden flower (diploid) 1	18.005
	CNS0095602	Golden flower (diploid) 2	28.286
	CNS0095603	Golden flower (diploid) 3	26.285
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.285
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.325
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.932
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.197
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.397
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.848
	CNS0095610	Silvery flower (tetraploid) 1	34.668
	CNS0095611	Silvery flower (tetraploid) 2	26.743
	CNS0095612	Silvery flower (tetraploid) 3	6.038
	CNS0095613	Golden flower (tetraploid) 1	11.641
	CNS0095614	Golden flower (tetraploid) 2	27.065
	CNS0095615	Golden flower (tetraploid) 3	31.360
CRA001975	CRR073297	Stem 1	14.440
	CRR073298	Stem 2	13.110
	CRR073299	Stem 3	12.115
	CRR073300	Leaf 1	14.171
	CRR073301	Leaf 2	15.905
	CRR073302	Leaf 3	14.834
	CRR073303	Juvenile bud 1	16.999
	CRR073304	Juvenile bud 2	12.054
	CRR073305	Juvenile bud 3	17.842
	CRR073306	Third green 1	16.620
	CRR073307	Third green 2	13.233
	CRR073308	Third green 3	20.623
	CRR073309	Second white 1	6.346
	CRR073310	Second white 2	10.582
	CRR073311	Second white 3	7.762
	CRR073312	Silver flowering 1	2.903
	CRR073313	Silver flowering 2	2.366
	CRR073314	Silver flowering 3	2.759
	CRR073315	Gold flowering 1	17.297
	CRR073316	Gold flowering 2	30.183
	CRR073317	Gold flowering 3	16.048
	CRR073318	Tawny withering 1	6.063
	CRR073319	Tawny withering 2	4.799
	CRR073320	Tawny withering 3	5.572