Detail information of GWHGAAZE002693


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010057417.18.3934E-140PREDICTED: vesicle-fusing ATPase [Eucalyptus grandis]
COGNP_616739.10.000002hypothetical protein MA1813
Swissprottr|Q9M0Y8|NSF_ARATH1E-127Vesicle-fusing ATPase
trEMBLtr|A0A059C892|A0A059C892_EUCGR3E-140Uncharacterized protein {ECO:0000313|EMBL:KCW74577.1}
TAIR10AT4G04910.14E-99AAA-type ATPase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8437426684378786-
GWHAAZE00000001mRNA8437426684378786-
GWHAAZE00000001exon8437426684374409-
GWHAAZE00000001exon8437496184375026-
GWHAAZE00000001exon8437514784375269-
GWHAAZE00000001exon8437795584378042-
GWHAAZE00000001exon8437813884378196-
GWHAAZE00000001exon8437842284378481-
GWHAAZE00000001exon8437857484378634-
GWHAAZE00000001exon8437871084378786-
GWHAAZE00000001CDS8437871084378786-
GWHAAZE00000001CDS8437857484378634-
GWHAAZE00000001CDS8437842284378481-
GWHAAZE00000001CDS8437813884378196-
GWHAAZE00000001CDS8437795584378042-
GWHAAZE00000001CDS8437514784375269-
GWHAAZE00000001CDS8437496184375026-
GWHAAZE00000001CDS8437426684374409-
Transcript Sequence

Network for GWHGAAZE002693

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.30AAA191334.40E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06027NSF, SEC18 Autophagy - yeast map04138
Vasopressin-regulated water reabsorptionmap04962
GABAergic synapsemap04727
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf90.224
SRR3591706second leaf39.458
SRR3591707mature leaf20.227
SRR3591708Shoot apex57.194
SRR3591709Stem86.353
SRR3591710White floral bud48.284
SRR3591711White flower43.643
SRR3591712Green floral bud70.367
SRR3591713Yellow flower53.639
SRP173429 SRR8316895Juvenile bud stage 40.090
SRR8316896Juvenile bud stage 65.538
SRR8316897Juvenile bud stage 41.191
SRR8316894Third green stage 26.779
SRR8316900Third green stage 65.045
SRR8316901Third green stage 63.856
SRR8316898Complete white stage 24.431
SRR8316899Complete white stage 65.465
SRR8316903Complete white stage 31.560
SRR8316902Silver flowering stage20.792
SRR8316904Silver flowering stage26.592
SRR8316905Silver flowering stage13.386
SRR8316906Gold flowering stage 38.440
SRR8316907Gold flowering stage 34.308
SRR8316908Gold flowering stage 42.087
SRP132670SRR6706286Control15.438
SRR6706287Light intensity 50%16.382
SRR6706288Light intensity 20%20.900
CNP0000432CNS0095592Slightly white alabastrum(diploid) 179.633
CNS0095593Slightly white alabastrum(diploid) 275.854
CNS0095594Slightly white alabastrum(diploid) 375.386
CNS0095595Whole white alabastrum(diploid) 277.650
CNS0095596Whole white alabastrum(diploid) 378.041
CNS0095597Whole white alabastrum(diploid) 466.743
CNS0095598Silvery flower (diploied) 142.918
CNS0095599Silvery flower (diploied) 244.240
CNS0095600Silvery flower (diploied) 343.798
CNS0095601Golden flower (diploid) 132.426
CNS0095602Golden flower (diploid) 237.036
CNS0095603Golden flower (diploid) 333.166
CNS0095604Slightly white alabastrum(tetraploid) 169.357
CNS0095605Slightly white alabastrum(tetraploid) 270.991
CNS0095606Slightly white alabastrum(tetraploid) 359.242
CNS0095607Whole white alabastrum(tetraploid) 171.305
CNS0095608Whole white alabastrum(tetraploid) 265.487
CNS0095609Whole white alabastrum(tetraploid) 359.084
CNS0095610Silvery flower (tetraploid) 130.257
CNS0095611Silvery flower (tetraploid) 226.553
CNS0095612Silvery flower (tetraploid) 327.757
CNS0095613Golden flower (tetraploid) 122.277
CNS0095614Golden flower (tetraploid) 228.744
CNS0095615Golden flower (tetraploid) 328.126
CRA001975CRR073297Stem 134.853
CRR073298Stem 230.795
CRR073299Stem 338.022
CRR073300Leaf 135.524
CRR073301Leaf 238.259
CRR073302Leaf 334.168
CRR073303Juvenile bud 143.733
CRR073304Juvenile bud 224.091
CRR073305Juvenile bud 335.435
CRR073306Third green 115.288
CRR073307Third green 216.573
CRR073308Third green 314.252
CRR073309Second white 120.099
CRR073310Second white 217.983
CRR073311Second white 314.345
CRR073312Silver flowering 126.585
CRR073313Silver flowering 228.855
CRR073314Silver flowering 325.269
CRR073315Gold flowering 110.625
CRR073316Gold flowering 215.750
CRR073317Gold flowering 311.627
CRR073318Tawny withering 158.857
CRR073319Tawny withering 252.015
CRR073320Tawny withering 363.494