Gene detail

Detail information of GWHGAAZE002695

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009356817.1	0	PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Pyrus x bretschneideri]
Swissprot	tr\|Q8GY87\|UBC26_ARATH	7E-124	Probable ubiquitin-conjugating enzyme E2 26
trEMBL	tr\|A0A061F7Z1\|A0A061F7Z1_THECC	0	Ubiquitin-conjugating enzyme 25, putative isoform 1 {ECO:0000313\|EMBL:EOY13003.1}
TAIR10	AT1G53025.1	6E-106	Ubiquitin-conjugating enzyme family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	84424258	84428146	+
GWHAAZE00000001	mRNA	84424258	84428146	+
GWHAAZE00000001	exon	84424258	84424323	+
GWHAAZE00000001	exon	84424475	84424777	+
GWHAAZE00000001	exon	84424872	84425639	+
GWHAAZE00000001	exon	84425721	84425784	+
GWHAAZE00000001	exon	84425998	84426137	+
GWHAAZE00000001	exon	84426536	84426847	+
GWHAAZE00000001	exon	84427153	84427209	+
GWHAAZE00000001	exon	84427883	84428146	+
GWHAAZE00000001	CDS	84424258	84424323	+
GWHAAZE00000001	CDS	84424475	84424777	+
GWHAAZE00000001	CDS	84424872	84425639	+
GWHAAZE00000001	CDS	84425721	84425784	+
GWHAAZE00000001	CDS	84425998	84426137	+
GWHAAZE00000001	CDS	84426536	84426847	+
GWHAAZE00000001	CDS	84427153	84427209	+
GWHAAZE00000001	CDS	84427883	84428146	+

Transcript Sequence
>GWHTAAZE002699 ATGTATGAAGATTGTGGGGGCCTAATGATCCTTGGTGGGAAAGTTGACACAAATAGCAAAGGGAAGGAACCTGTGGTCAATTTTTCATCTGAACCTGGTGTGGCAGCAAAACTGGGATCAATGAATGGGGTTGACTCTTTGACGAAGAGCAGTGCTGTAGGATCAGAAAATTTAAATAATTTAGATAGTTTCAGTACAGATTTATCATATGGCAATGAGTATTTGGACATCTATTGTGAAGATTTTATGTATGATGACGATTACGCAATTTTGCAATCCCATTTTGATAGTATAGATTTTCCTTCTGGAGTCGAGGCTCCCATTCCTTGGTTGCCAGGTCCTGCGCAATGTGCTAGTATGCCAGCTGCTGAACCTGCCCAAATAAGGAAAACGAGCAGCAGTTCAAGCTTGCGATCTAAAATGGAGAATGTAAATCCGCAGCCTAAGGTAGATTCGTCATTTGGGTTTCTTACTGAGAAGTTTGCTCCAAGTAAGAAAAATGTGGCTGTCTTGAGTGATTCAACTTATTCAAGCTTGCAAACCCAAAGTGGTGATGTTAATTTCCCATCTGGCCCGAAGCCATTCAGATCTTCGAGCCGGAGTGTATCTTCCCATGGTAAAAGGAAGCCTGTTGTCTCGGGTGGTACCATTTCTAGTAGTTCACATGAGCAACTTGGCGGTATGCAATTGAATCTTGGACCTGGGATTCAGCCTTTTTGCGCATCTAATTATTCAAATAGTAGAAAGAAGCAACTGGGGAGTGCTGGTGCTTATTCAAGTCCTCATTTTCCAGCGGGCACAAAAAATCCTCCACCACCTATGCCATTGAAGTGGGAAAATTTCCTCTCCATGCAGAAACAGTCGATGATGAGTGCTCCACCTTATCCAGGGTTGATTCATCCAAATTCAGTCTTTTCTGGGGGAGTGGCACATGACCCCTGGTTCAATGATCTTGGCCAAAACAAGAGTGTAACTGATGTAGGAAATTCAACGGTGCCACTTGTGTCATCTTCTAGCATGGAAAAGTATGGGGATGATGAAGAAATTCTGAAGAAGTTCCAACTTTTCAAAAAATTTGATACCGTTGAAGACCATTCGGACCATCACTACTTGCGCAATGGTTCTTCGGTGAAGCAGCCATCAAAGAATTGGGCAAAGAAAATACAAGATGAGTGGAAGATCTTGGAGAAGGATTTACCTGATACGATATTCGTTAGGGTTTATGAATCAAGGATGGATCTTTTGAGGGCTGTAATTGTAGGAGCAGAGGGGACTCCCTACCATGACGGGCTCTTCTTCTTTGACGTGTTCTTCCCTAGCAGTTATCCTAATGTCCCTCCTCATGTGTACTACCATTCTGGTGGACTCCGAATCAATCCAAATCTGTACAATTGTGGAAAAGTATGTTTGAGTCTTCTTAATACTTGGTCCGGTGGCCAGAAAGAGAAATGGATCCCTGGTGTATCGACCATGCTACAAGTTTTGGTCTCAATACAAGGGCTTATTTTGAATGCAAAGCCATACTTTAATGAGCCTGGATATGCAAATTCGAGCGGCTCGCCAAGTGGAGAAATGCACTCCTTGCAGTATAATGAGGATACTTTTATCAAGTCGCTTAAAACAATGGTGTACTCGATCAGGAGGCCCCCAAAGATTATTTTCGGGAAGAGACATTATAAGCATGTTAACTCAGAATGCATGCTAGACATGCATTTTGAGGACTTGGTGTTGGGGCATTATCTCACGCGTGCGCATGAAATACTAGTGGCATGTAAAGCTTATATGGATGGGGCCCAAGTAGGGTGTCTAGTGAGAGGAGGGGTGCAGGACGTTGACGAGGGTGACAAGAGCTGCTCTCAGGCTTTCAAGGCAAATTTGTTAGCCCACATGGATATGCTCGTAAAAGCATTTAAGCAAGTCGGAGCAAAGGATTGTGACAAGTTCCTCTCTCTAACACAAACCGGATCAGGGTAG

Network for GWHGAAZE002695

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.27	UQ_con	388	507	5.00E-23

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	pathway	mapID
K10581	UBE2O	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.394
	SRR3591706	second leaf	9.805
	SRR3591707	mature leaf	15.697
	SRR3591708	Shoot apex	15.229
	SRR3591709	Stem	28.659
	SRR3591710	White floral bud	32.513
	SRR3591711	White flower	47.434
	SRR3591712	Green floral bud	26.700
	SRR3591713	Yellow flower	38.889
SRP173429	SRR8316895	Juvenile bud stage	18.819
	SRR8316896	Juvenile bud stage	27.869
	SRR8316897	Juvenile bud stage	10.387
	SRR8316894	Third green stage	10.515
	SRR8316900	Third green stage	31.456
	SRR8316901	Third green stage	29.126
	SRR8316898	Complete white stage	21.452
	SRR8316899	Complete white stage	52.034
	SRR8316903	Complete white stage	30.140
	SRR8316902	Silver flowering stage	26.702
	SRR8316904	Silver flowering stage	37.737
	SRR8316905	Silver flowering stage	18.244
	SRR8316906	Gold flowering stage	69.240
	SRR8316907	Gold flowering stage	61.005
	SRR8316908	Gold flowering stage	52.649
SRP132670	SRR6706286	Control	21.260
	SRR6706287	Light intensity 50%	22.567
	SRR6706288	Light intensity 20%	25.864
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.227
	CNS0095593	Slightly white alabastrum(diploid) 2	16.295
	CNS0095594	Slightly white alabastrum(diploid) 3	18.620
	CNS0095595	Whole white alabastrum(diploid) 2	14.025
	CNS0095596	Whole white alabastrum(diploid) 3	11.744
	CNS0095597	Whole white alabastrum(diploid) 4	13.368
	CNS0095598	Silvery flower (diploied) 1	20.794
	CNS0095599	Silvery flower (diploied) 2	16.787
	CNS0095600	Silvery flower (diploied) 3	41.017
	CNS0095601	Golden flower (diploid) 1	17.517
	CNS0095602	Golden flower (diploid) 2	38.992
	CNS0095603	Golden flower (diploid) 3	35.183
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.195
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.136
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.465
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.636
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.162
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.592
	CNS0095610	Silvery flower (tetraploid) 1	47.139
	CNS0095611	Silvery flower (tetraploid) 2	46.892
	CNS0095612	Silvery flower (tetraploid) 3	33.874
	CNS0095613	Golden flower (tetraploid) 1	28.874
	CNS0095614	Golden flower (tetraploid) 2	39.606
	CNS0095615	Golden flower (tetraploid) 3	47.402
CRA001975	CRR073297	Stem 1	24.297
	CRR073298	Stem 2	23.070
	CRR073299	Stem 3	22.387
	CRR073300	Leaf 1	27.834
	CRR073301	Leaf 2	26.808
	CRR073302	Leaf 3	21.628
	CRR073303	Juvenile bud 1	26.933
	CRR073304	Juvenile bud 2	24.950
	CRR073305	Juvenile bud 3	24.995
	CRR073306	Third green 1	16.541
	CRR073307	Third green 2	12.086
	CRR073308	Third green 3	18.131
	CRR073309	Second white 1	18.633
	CRR073310	Second white 2	24.222
	CRR073311	Second white 3	25.263
	CRR073312	Silver flowering 1	16.727
	CRR073313	Silver flowering 2	8.618
	CRR073314	Silver flowering 3	11.244
	CRR073315	Gold flowering 1	17.969
	CRR073316	Gold flowering 2	27.991
	CRR073317	Gold flowering 3	16.815
	CRR073318	Tawny withering 1	20.095
	CRR073319	Tawny withering 2	19.813
	CRR073320	Tawny withering 3	19.018