Gene detail

Detail information of GWHGAAZE002707

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002263264.1	0	PREDICTED: uncharacterized protein LOC100257013 [Vitis vinifera]
COG	YP_001958461.1	1E-27	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	2E-50	Serine/threonine-protein kinase EDR1
trEMBL	tr\|F6H9V0\|F6H9V0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48993.1}
TAIR10	AT1G16270.2	0	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	84618586	84624254	+
GWHAAZE00000001	mRNA	84618586	84624254	+
GWHAAZE00000001	exon	84618586	84621108	+
GWHAAZE00000001	exon	84621202	84621273	+
GWHAAZE00000001	exon	84621496	84621648	+
GWHAAZE00000001	exon	84621777	84621940	+
GWHAAZE00000001	exon	84622138	84622285	+
GWHAAZE00000001	exon	84622415	84622537	+
GWHAAZE00000001	exon	84623772	84623859	+
GWHAAZE00000001	exon	84624064	84624254	+
GWHAAZE00000001	CDS	84618586	84621108	+
GWHAAZE00000001	CDS	84621202	84621273	+
GWHAAZE00000001	CDS	84621496	84621648	+
GWHAAZE00000001	CDS	84621777	84621940	+
GWHAAZE00000001	CDS	84622138	84622285	+
GWHAAZE00000001	CDS	84622415	84622537	+
GWHAAZE00000001	CDS	84623772	84623859	+
GWHAAZE00000001	CDS	84624064	84624254	+

Transcript Sequence
>GWHTAAZE002711 ATGATGGAAAAATCAAACAATTATAACTACGTTCCTTACAATTCCATGGAATCTGAGGTTGAAAAACTTGGACCTCCCTCTCAGGGTTTCCTGGTGGACCATATGGGCCACGTAAATGCAAATGTGAGACCTGCAGAACTTAATTTTCCGGAAGTTAAACCTGTGCATAATTTCTCTATACAGACGGGCGAGGAGTTTGCTCTTGAATTTATGCGTGATCGGGTGAACCCCAGGAAGCCATTCATCCCATATACTTCTAGTGATCCTAGTCTTACAACAGGTTACCTAGAACTAAAGGGCATTTTAGGCATTAGCCATGCTGGGTCTGAAGGTTCAGATATTTCCATGCTCTCCATTGTAGAGAAAGGTTCAAAAGACGAGCGGAAGAACTCTTCATTGTATGAGGAGAAAAGTAACTACGGTTCCATGATGTCAGTACCACGAACTTCATCAGACTACAGCAATCGGACGGTTATTCACGAGTATGCCTCTTCTGGAGCATCTGATAGCTCATCTACAAAGATTAAGGTGCTCTGCAGCTTCGGCGGAAAAATTCTACCTCGACCAAGTGATGGGAAGCTCAGATATGTTGGTGGGGATACGCGCATTATCCGTATACGCAAGGACATTACCTGGGGGGAGCTGTGGCAGAAAACAGTAGCAATTTATTACGAAGTTCATATAATCAAATACCAGCTTCCTGGGGAGGATCTTGATGCTTTGGTTTCCGTGTCTTGTGATGAGGATTTGCAGAACATGATGGAGGAGTGTAATGTACTAGGAGATGGAGGTGGATCAAAGAAGCTTAGGATGTTTCTTTTCTCCATTAGTGACTTGGATGATACCCATTTTGATCTGGCCAACTCAGGTGGTGATTCCGAGATTCAATATGTAGTCGCTGTAAATGGCATGGACGCGGGTTCAAGAAGGGACTCAGGTCTGCACGGTCTAGCAAGCTCTTCAGCAAATAATTTAGATGAGCTAAATGGACCAAGTGTTAGTAGAGCTGCAATTGACTTTGTTGGAACTAATACTTCACCTATGACAACTCAATCTTCTCAAGCTCAAGCGATTCCATCAAGTTCCTCCAACGCTTATGAAACCAATTCGCAGTTTTATCAAGGCCAGATGTTGCATCAAGGAGAAGCTAATAACCAGTATCCATTGCAATACAGCTCTGAAATTCATCCTTCTAGTTATACACCTTTTGCGGAAAGTTCTATTCTGCTGCCTTATAATGGGCTTGTGGTTCAACAAGTGGGTTCAACTGAGGAGCAGCCATCCAGTGCTTTGCGGTTGCAAGACCCACAACCGCAAGTAAGAGAGGTGAAGCAGAAAGGCGACGTTTCTTCCATTCAGCAAGATGGTGAACATGATAATAGTCAATCTTCAAGAAGTGATTACCTTAATCAGTTACCACCATCACCATATGATGGTAAATCTTCAAAGAACGAGGGGAGGAGGCACCAGGAACATGTACGGGTCTCTTCGCCACTTGATGCTGTTAATCCTGTGAATAATATTCCTAAACCTAGCGGTAACGAGTTGAACACAACTAGTACTGCCTCTGCTCTTGAATGTTCCAACTCACAGTCGGATCTAATTGATTTGAGCTACCTTGAACCACCTGTACCTCCTCAGAGGGTCTTTCACTCCTTGCGAATTCCTCGGGATCAGTCAGAGTCATTAAACAGGTTAACCAAGTCGGACGATTCACTTGGTTCTCAGTTTCTAATAACTCATTCACGTTCTGATGTTGTGGCTCATGATTTAGTTACAGAATCTGTTGAAGAGTTGCATAATCAAAATACAGAGGCAGTACTTGACCCGGTGGACGATAATTTCATTGTAACAGAGAATCAGGTTCTTAATGCCAGAGATAACAATAAGAATAATACCCTGATTGAGGAAGCAGCAGAAGTTAGCAGTGATTTCTCTACAAATAACACTCAAGGGCATGTGCAACCTTCTGCAAAAAATGTTATCGTGGGAGAACAGTCTACTGGTGTTTCCAGACGAGAGCGGGGAGACATCCTTATTGATATTAATGACCGATTCCCTCGTGATTTCCTGACTGACATATTTTCGAAAGCAATGATATCTGAGGACTTGTCTGATGATGGTCCAGTACAAAATGATGGGAGTGGTTTAAGCATGAACATAGCAAATCATGAACCTAAACATTGGTCATATTTCCAGAAACTGGCACATGATGAGTTTGGCCAGAAGGATGATTCTCTTATTGACCAGGATCATATTGGTTTTTCATCTGTGGTGCAAGAAGTTGATGAAGAAGTATCTCCTGCTCATAAATTTACACCATTAAAGGAAGACGGAGTGTCCACGAGCCAGATCGAATCCAGAAATAATTTATCTGAAGACCGCCAGATAGAAGTACCCAGTACAATGGGGGCTGAGACCATAGCTCTAAACTCAGATTATAGTCCTTCCCAAGTGGAATACAGTGAAGGTCTGCAGCTTGATGATACGGTGAACACAAGAATACCAGAGTCCGAGTATGAGGATGGGATCAGGACTATTGGCTTGCCTCCTCTGGATCCTTCTTTGGGTGAATTTGATATTAGTTCTTTGCAGATAATAAAGAATGAAGACCTTGAGGAGCTAAGGGAACTGGGTGCAGGTACTTTTGGGACAGTCTATCATGGAAAATGGAGAGGAACAGATGTTGCCATCAAGCGAATAAAAAAAAGCTGCTTTGCGGGTCGATCATCTGAGCAAGAGAGATTGACAGTAGAGTTCTGGCATGAGGCTGAAATTCTCTCAAAGCTTCATCATCCAAACGTCGTGGCATTTTATGGTGTAGTCCAAGATGGACCAGGGGGGACATTAGCTACAGTAGCAGAGTTCATGGTTGATGGTTCTCTTAGACATGTTTTACTTCGCAAAGATAGGCAACTTGATCATCGCAAGAAGCTTATAATTGCCATGGATGCAGCCTTTGGAATGGAGTATTTACATTCAAAGAACATAGTTCATTTTGATCTCAAATGTGACAACTTGCTAGTGAACTTGAAAGATCCTTCACGACCAATTTGCAAGGTAGGAGACTTTGGCCTGTCAAAAATCAAGCGAAACACTTTGGTTTCTGGTGGGGTTAGGGGAACCCTGCCCTGGATGGCCCCAGAGCTGCTGAATGGTGGTAGCAATAAAGTTTCCGAAAAGGTTGATGTATTCTCCTTTGGTATTGTCCTATGGGAGATTCTCACTGGCGAGGAGCCTTATGCGAACATGCACTATGGTGCAATCATAGGCGGGATTGTGAACAATACTCTGAGGCCAAATGTTCCAAACTGGTGTGACTATGAATGGAGAAGGTTAATGGAGCAGTGTTGGGCCCCTAATCCAATGGTCAGGCCATCATTCACCGAGATCACTAGGCGTTTACGCGTCATGTCAGCAGCTTGCCAAACCAAAGCACAGGCTCACAAGGCATCTCACTAA

Network for GWHGAAZE002707

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00564.25	PB1	191	274	2.20E-17
PF07714.18	PK_Tyr_Ser-Thr	874	1135	3.20E-61

Protein Sequence

>GWHPAAZE002709
MMEKSNNYNYVPYNSMESEVEKLGPPSQGFLVDHMGHVNANVRPAELNFPEVKPVHNFSIQTGEEFALEFMRDRVNPRKPFIPYTSSDPSLTTGYLELKGILGISHAGSEGSDISMLSIVEKGSKDERKNSSLYEEKSNYGSMMSVPRTSSDYSNRTVIHEYASSGASDSSSTKIKVLCSFGGKILPRPSDGKLRYVGGDTRIIRIRKDITWGELWQKTVAIYYEVHIIKYQLPGEDLDALVSVSCDEDLQNMMEECNVLGDGGGSKKLRMFLFSISDLDDTHFDLANSGGDSEIQYVVAVNGMDAGSRRDSGLHGLASSSANNLDELNGPSVSRAAIDFVGTNTSPMTTQSSQAQAIPSSSSNAYETNSQFYQGQMLHQGEANNQYPLQYSSEIHPSSYTPFAESSILLPYNGLVVQQVGSTEEQPSSALRLQDPQPQVREVKQKGDVSSIQQDGEHDNSQSSRSDYLNQLPPSPYDGKSSKNEGRRHQEHVRVSSPLDAVNPVNNIPKPSGNELNTTSTASALECSNSQSDLIDLSYLEPPVPPQRVFHSLRIPRDQSESLNRLTKSDDSLGSQFLITHSRSDVVAHDLVTESVEELHNQNTEAVLDPVDDNFIVTENQVLNARDNNKNNTLIEEAAEVSSDFSTNNTQGHVQPSAKNVIVGEQSTGVSRRERGDILIDINDRFPRDFLTDIFSKAMISEDLSDDGPVQNDGSGLSMNIANHEPKHWSYFQKLAHDEFGQKDDSLIDQDHIGFSSVVQEVDEEVSPAHKFTPLKEDGVSTSQIESRNNLSEDRQIEVPSTMGAETIALNSDYSPSQVEYSEGLQLDDTVNTRIPESEYEDGIRTIGLPPLDPSLGEFDISSLQIIKNEDLEELRELGAGTFGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLTVEFWHEAEILSKLHHPNVVAFYGVVQDGPGGTLATVAEFMVDGSLRHVLLRKDRQLDHRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPSRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGGSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPNVPNWCDYEWRRLMEQCWAPNPMVRPSFTEITRRLRVMSAACQTKAQAHKASH

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-6

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.043
	SRR3591706	second leaf	13.507
	SRR3591707	mature leaf	15.828
	SRR3591708	Shoot apex	20.547
	SRR3591709	Stem	38.656
	SRR3591710	White floral bud	24.240
	SRR3591711	White flower	33.942
	SRR3591712	Green floral bud	25.396
	SRR3591713	Yellow flower	26.656
SRP173429	SRR8316895	Juvenile bud stage	12.847
	SRR8316896	Juvenile bud stage	18.620
	SRR8316897	Juvenile bud stage	9.146
	SRR8316894	Third green stage	8.838
	SRR8316900	Third green stage	19.106
	SRR8316901	Third green stage	19.942
	SRR8316898	Complete white stage	5.661
	SRR8316899	Complete white stage	24.899
	SRR8316903	Complete white stage	12.187
	SRR8316902	Silver flowering stage	6.793
	SRR8316904	Silver flowering stage	10.400
	SRR8316905	Silver flowering stage	5.087
	SRR8316906	Gold flowering stage	17.490
	SRR8316907	Gold flowering stage	15.931
	SRR8316908	Gold flowering stage	17.556
SRP132670	SRR6706286	Control	16.556
	SRR6706287	Light intensity 50%	17.177
	SRR6706288	Light intensity 20%	18.682
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.711
	CNS0095593	Slightly white alabastrum(diploid) 2	14.661
	CNS0095594	Slightly white alabastrum(diploid) 3	11.524
	CNS0095595	Whole white alabastrum(diploid) 2	10.444
	CNS0095596	Whole white alabastrum(diploid) 3	10.076
	CNS0095597	Whole white alabastrum(diploid) 4	13.591
	CNS0095598	Silvery flower (diploied) 1	14.222
	CNS0095599	Silvery flower (diploied) 2	14.776
	CNS0095600	Silvery flower (diploied) 3	21.314
	CNS0095601	Golden flower (diploid) 1	13.470
	CNS0095602	Golden flower (diploid) 2	22.099
	CNS0095603	Golden flower (diploid) 3	21.943
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.705
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.384
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.888
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.659
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.218
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.820
	CNS0095610	Silvery flower (tetraploid) 1	22.649
	CNS0095611	Silvery flower (tetraploid) 2	25.492
	CNS0095612	Silvery flower (tetraploid) 3	16.932
	CNS0095613	Golden flower (tetraploid) 1	11.151
	CNS0095614	Golden flower (tetraploid) 2	20.059
	CNS0095615	Golden flower (tetraploid) 3	14.953
CRA001975	CRR073297	Stem 1	16.535
	CRR073298	Stem 2	15.128
	CRR073299	Stem 3	12.677
	CRR073300	Leaf 1	21.059
	CRR073301	Leaf 2	19.641
	CRR073302	Leaf 3	11.736
	CRR073303	Juvenile bud 1	12.760
	CRR073304	Juvenile bud 2	9.543
	CRR073305	Juvenile bud 3	19.405
	CRR073306	Third green 1	3.343
	CRR073307	Third green 2	3.363
	CRR073308	Third green 3	5.037
	CRR073309	Second white 1	3.603
	CRR073310	Second white 2	4.502
	CRR073311	Second white 3	3.668
	CRR073312	Silver flowering 1	2.597
	CRR073313	Silver flowering 2	3.745
	CRR073314	Silver flowering 3	3.065
	CRR073315	Gold flowering 1	6.266
	CRR073316	Gold flowering 2	13.121
	CRR073317	Gold flowering 3	7.820
	CRR073318	Tawny withering 1	21.431
	CRR073319	Tawny withering 2	18.311
	CRR073320	Tawny withering 3	21.474