Gene detail

Detail information of GWHGAAZE002717

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008452480.1	0	PREDICTED: WD repeat-containing protein 44 isoform X1 [Cucumis melo]
COG	NP_488874.1	1E-17	hypothetical protein all4834
Swissprot	tr\|P49177\|GBB_ARATH	0.00000008	Guanine nucleotide-binding protein subunit beta
trEMBL	tr\|A0A0A0L3G4\|A0A0A0L3G4_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN55147.1}
TAIR10	AT5G54200.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	84828828	84838493	-
GWHAAZE00000001	mRNA	84828828	84838493	-
GWHAAZE00000001	exon	84828828	84829435	-
GWHAAZE00000001	exon	84832743	84832836	-
GWHAAZE00000001	exon	84833063	84833145	-
GWHAAZE00000001	exon	84833239	84833290	-
GWHAAZE00000001	exon	84833437	84833594	-
GWHAAZE00000001	exon	84833959	84834049	-
GWHAAZE00000001	exon	84836178	84836207	-
GWHAAZE00000001	exon	84836595	84836687	-
GWHAAZE00000001	exon	84836793	84838493	-
GWHAAZE00000001	CDS	84836793	84838493	-
GWHAAZE00000001	CDS	84836595	84836687	-
GWHAAZE00000001	CDS	84836178	84836207	-
GWHAAZE00000001	CDS	84833959	84834049	-
GWHAAZE00000001	CDS	84833437	84833594	-
GWHAAZE00000001	CDS	84833239	84833290	-
GWHAAZE00000001	CDS	84833063	84833145	-
GWHAAZE00000001	CDS	84832743	84832836	-
GWHAAZE00000001	CDS	84828828	84829435	-

Transcript Sequence
>GWHTAAZE002721 ATGAGCAAATCCACCGCCGACGAAGAAGACGAAGACGAGTTTTTCTACGAATCCCTCGATCGTATCCTCTCCTCCACCGCCTCTTCCTGTTCTCCTTCCTCTTCCTCTTCTTCTTCTTCTGAACAAGAAGAAGAAGTTCCCAATTCCACTTCCCCCAATTATGCTCTTAACCCTCCCCTCTCAATCCCTAAGTTCCCCATGGGCCTTTCAAACAACTACGATATTTGGATCTCCGAACCTGCTTCTATCAAAGAGCGCCGCATCCGTTTGCTTAAGCAGATGGGCCTCAGTAATGACCCCACCCTCTCCCGCCAAAACGACGCCAGTCGTCGCGGTTTTGATTTCGGTAGATCCGTATCCTCCGATCCGATTTGTTGCACTGGTGATTCTTCTGACCCTGGGATCGTTCTTTCGAAATCCGAGATTTCGACAGAACAGTGTAATTCTAATTCTTCCGTTTATTCAAGTGAAATTGTTTCTATTTGTTCGAATTCCTCGAATGTGGATAATGTAATTCGAGGCGGTGGAGTAAATGTAAATGTAAATGTAAATAATAATAATAATAATAATAATAATAATAGTAGTAGTAGTACTAGTCAAAGTATTGGTAAATCGCCGAGTGGCAATGGATCGTCGCCTGTTGTCAATGGTGTTTTGGTAAATAAGCCGCCTACAGGGAAAAACTGTAGGCGGTTTGAAGATGTTAAGACGGATTGTGTACGATCTACTGCGAATGTTAATTACAATTCTGTGCCTGTGTTGGAAAACGGGTGCGGTGGTGAAATGAAGGATGTTGCTGATTCTAATGGGATTGTTACGGTTAATGATCCAGTATGCACAATTAGGAACCTTGACAATGGGAAGGAGTTTGTGGTAAATGAGGTTCGAGGGGATGGGACGTTGAACAAGCTTAAAGAGGTGGGCACCGGGAGGCAGTTGACTATGGAGGAGTTTGAGATGTGTGTTGGTCATTCACCTATTGTTCAAGAATTAATGAGAAGGCAGAATGTGGAGGATAGTAATAATAAGGATAATGTCGATTCGAATGTGAATGGAAGTGGAGGGAGTGGATCCAAATTGAAAAAGAAAGGGAGCTGGTTGAGGAGCATAAAGAATGTTGCTAGTTCTGTGACAGGTCATAAGGAGAGACGGAGCAGTGATGAGAGGGATACTTCATCGGAGAAAGGTGGGCGGAGGTCAAGCTCAGCCACTGATGATAGCCAAGATGTTTCATTCCATGGGCCAGAGAAAATTAGGGTCCGACAATACGGAAAGTCGTATAAAGAGCTTACTGCGGTCTACAAGAGCCAAGAGATACAGGCTCATAATGGCTCTATTTGGACTAGTAAGTTTAGTTTGGATGGAAAATATCTGGCTAGTGCGGGTGAGGACTGTGTCATTCATGTCTGGCAGGTTGTGGAATCGGAGAGGAAGGGTGATCTTTTATTGGATAAAACCGAAGATGGGAATTTGAATATTTTATTCTTGGGCAATGGGTCCCCTGAACCAAATTCGATGTCACCTAATTTGGACAGCCATTTAGAAAAGAAGAGAAGGGGAAGGTCGTCCATAAGCCGAAAATCAGTGAGCTTGGATCGTGTTGTGGTTCCAGAAACAGTGTTTGCCCTTTCGGAAAAACCGTTTTGTTCATTCAAAGGTCATCTGGATGATGTGCTTGACCTGTCATGGTCCAAGTCTCAGGTTAGTGTCAGGAATCCTAACCGTCCCTCCGTAATTACTAATGAATTACATACTAGGGAACTTCTTTATGTTTTGGGTCTAGTAACACTTGAGATGGACGATGGTGCTACAGAAAGCTACCAGCATTTGCTTTCATCTTCAATGGACAAAACGGTGCGTTTGTGGCATTTGTCCAGCAATTCTTGTTTGAAGATTTTTTCACACAGTGACTATGTAACATGCATCCAGTTTAATCCTGTTGATGACAAATACTTCATCAGTGGTTCGCTAGATGCTAAGGTTCGCATATGGAGCATTCCTGACCGTCAAGTTGTTGATTGGAATGATTTGCATGAGATGGTCACTGCAGCTTGCTATACACCAGATGGTCAGGCTGCACTAGTTGGTTCATACAAGGGGAGCTGCCGTTTGTATAACATATCTGAAAATAAGATGCAGCAAAAAAGTCAAATCAATCTTCAAAACAAGAAGAAGAAGTCTCATCACAAGAAGATTACTGGCTTCCAGTTTGCCCCAGGAAGTACATCAGAGGTGCTTATCACTTCTGCAGATTCACGGATCCGGGTGGTTGATGGTATTGATCTGATCCACAAGTTCAAAGGGTTTCGAAACACGAACAGCCAGATTTCTGCCTCCCTCACATCCAACGGCAAATACGTGGTCTGCGCGAGTGAGGATTCTCACGTGTATGTGTGGAAACATGAAGGCGATTCTCGGCCCAGCAGAACCAAGGGTGTCACCATCACTCGCTCTTACGAGCACTTCCACTGCCAAGACGTATCCATGGCCATCCCCTGGCCTGGAATATCCTCCGACACCTGGGGATTCGAAGATACATTTTCCCAAGAACCAAACAGTCTCGGTGATCACCTGGACGAGGTCTCTACAGCTAACCATCCTCCTACACCTGTCGAAGAGATTATTAATAACGGTGACGAGAATTCACCGTTGGCATCGGTGTGTACTAATAGTCTGCTCCATGGAACTATTTCTAGTGCAACAAACAGTTACTTCTTTGATAGAATATCAGCAACTTGGCCAGAAGAAAAGCTTGTTCTAGCGGCCAAGAACCGTAGCCCTCATGCCAGTGTGGACTTCTCAAACAGGGTGAATCAAAGGAAGTCGGCTTGGGGTATGGTGATTGTAACAGCTGGGCTCCGAGGAGAAATTAGAACTTTCCAGAATTTTGGATTACCTGTTCGAATTTAG

Network for GWHGAAZE002717

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	438	470	0.0067
PF00400.33	WD40	628	665	0.00083
PF00400.33	WD40	762	800	0.18

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.364
	SRR3591706	second leaf	11.744
	SRR3591707	mature leaf	10.575
	SRR3591708	Shoot apex	14.880
	SRR3591709	Stem	20.020
	SRR3591710	White floral bud	16.654
	SRR3591711	White flower	17.044
	SRR3591712	Green floral bud	18.109
	SRR3591713	Yellow flower	11.380
SRP173429	SRR8316895	Juvenile bud stage	11.232
	SRR8316896	Juvenile bud stage	14.681
	SRR8316897	Juvenile bud stage	7.680
	SRR8316894	Third green stage	7.371
	SRR8316900	Third green stage	16.798
	SRR8316901	Third green stage	16.496
	SRR8316898	Complete white stage	5.947
	SRR8316899	Complete white stage	21.263
	SRR8316903	Complete white stage	9.542
	SRR8316902	Silver flowering stage	7.032
	SRR8316904	Silver flowering stage	8.352
	SRR8316905	Silver flowering stage	3.739
	SRR8316906	Gold flowering stage	11.962
	SRR8316907	Gold flowering stage	10.364
	SRR8316908	Gold flowering stage	12.063
SRP132670	SRR6706286	Control	19.755
	SRR6706287	Light intensity 50%	20.601
	SRR6706288	Light intensity 20%	21.776
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.765
	CNS0095593	Slightly white alabastrum(diploid) 2	12.881
	CNS0095594	Slightly white alabastrum(diploid) 3	12.423
	CNS0095595	Whole white alabastrum(diploid) 2	10.533
	CNS0095596	Whole white alabastrum(diploid) 3	8.985
	CNS0095597	Whole white alabastrum(diploid) 4	9.498
	CNS0095598	Silvery flower (diploied) 1	10.423
	CNS0095599	Silvery flower (diploied) 2	9.068
	CNS0095600	Silvery flower (diploied) 3	17.861
	CNS0095601	Golden flower (diploid) 1	9.528
	CNS0095602	Golden flower (diploid) 2	15.449
	CNS0095603	Golden flower (diploid) 3	13.814
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.522
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.472
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.529
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.384
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.946
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.664
	CNS0095610	Silvery flower (tetraploid) 1	15.301
	CNS0095611	Silvery flower (tetraploid) 2	14.355
	CNS0095612	Silvery flower (tetraploid) 3	11.316
	CNS0095613	Golden flower (tetraploid) 1	6.829
	CNS0095614	Golden flower (tetraploid) 2	13.709
	CNS0095615	Golden flower (tetraploid) 3	9.725
CRA001975	CRR073297	Stem 1	26.377
	CRR073298	Stem 2	25.872
	CRR073299	Stem 3	19.323
	CRR073300	Leaf 1	28.809
	CRR073301	Leaf 2	32.914
	CRR073302	Leaf 3	18.265
	CRR073303	Juvenile bud 1	24.209
	CRR073304	Juvenile bud 2	14.059
	CRR073305	Juvenile bud 3	30.080
	CRR073306	Third green 1	9.938
	CRR073307	Third green 2	5.926
	CRR073308	Third green 3	8.646
	CRR073309	Second white 1	5.490
	CRR073310	Second white 2	7.172
	CRR073311	Second white 3	6.901
	CRR073312	Silver flowering 1	5.372
	CRR073313	Silver flowering 2	4.781
	CRR073314	Silver flowering 3	4.248
	CRR073315	Gold flowering 1	8.478
	CRR073316	Gold flowering 2	13.709
	CRR073317	Gold flowering 3	6.686
	CRR073318	Tawny withering 1	22.921
	CRR073319	Tawny withering 2	21.203
	CRR073320	Tawny withering 3	21.063