Gene detail

Detail information of GWHGAAZE002731

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011098356.1	0	PREDICTED: receptor-like protein kinase THESEUS 1 [Sesamum indicum]
COG	YP_008151634.1	4E-24	hypothetical protein SCE1572_26190
Swissprot	tr\|Q9LK35\|THE1_ARATH	0	Receptor-like protein kinase THESEUS 1 (Precursor)
trEMBL	tr\|A0A068V5C8\|A0A068V5C8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_106 {ECO:0000313\|EMBL:CDP15747.1}
TAIR10	AT5G54380.1	0	protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	85161856	85164366	+
GWHAAZE00000001	mRNA	85161856	85164366	+
GWHAAZE00000001	exon	85161856	85162426	+
GWHAAZE00000001	exon	85162463	85163027	+
GWHAAZE00000001	exon	85163061	85164366	+
GWHAAZE00000001	CDS	85161856	85162426	+
GWHAAZE00000001	CDS	85162463	85163027	+
GWHAAZE00000001	CDS	85163061	85164366	+

Transcript Sequence
>GWHTAAZE002735 ATGAAAATCTTGAAATGGGTACCTTTGATTCTACCTATTTGTCTACTAGGGTTGTTGTGTCATTTATCATTTGCTTCATTCACTCCTGCTGATAATTACTTGATTGCTTGTGGTTCTTCTCAAAATGTTGGCTTTCTTGGTCAAACATATACCCCTGATTCAGTGCAATCTTCAATTTCATTGAAATCTCAAGGGAACTCAATTGTTGCTACCTCCAATTCTAGTGCCCCATTTCCACTCTGCCAATCAGCCCGAATTTTCCCAACTACGGCATCTTACAAATTCAACATTAAACAAGAGGGTCGCCATTGGGTCCGCCTCTATTTTTATCCTCTTCCGGGTCACAACTTGACATCGGCCCTGTTCACTGTAGTCACGGAAGATTTTGTTCTCTTGAACAACTTCAGTTTCAAGAACTACAATGGTTCTTACCTCTTTAAGGAGTATGCAATCAATGTGACTTCAAATACCTTAACCCTTACCTTAATCCCCTCAAACAACTCAGTAGTGTTTGTTAATGCGATTGAAGTTGTCTCTATCCCAAACGAGCTGATCCCCAACCAAGCATTGGATCTCGCCTTTGAAACTGTTTACCGATTGAACATGGGCGGTCCGCTGCTCACTGCTCAAAATGACACTTTAGGGCGGACTTGGGAAAATGATGGGAAGTATTTACACGTTAATAGTTCTGCTGTGAACGTATCGGTTAATCCCGAGAACATAAAGTACCCCGCTGCAGTCACCCCTGAAACTGCACCGAATTTGGTTTACGCCACCGCTGAAACCATGGGTGATGCAGATGTAACCAACGTGAACTTCAATATAACGTGGGTCCTCAAAGTCGACCCTGATTTCAAGTACTTTGTACGTGTACATTTCTGTGATATTGTGAGCACTTCTTTGAACATGCTTGTGTTCAACCTGTATATAAATTCCGATATTGCTCATGGAAGTTTGGACCTGTCGACCCTTGCCGGTAACTTGAATGTGCCTTATTATAAAGATTTTGTCGCCAAATCTTCGGATGAATCAGATACTTTAACTGTTAGTGTCGGTCCAGACACTAGCGCTGACTTTTTCAATGCAATTATGAATGCATTGGAAGTGATGAAGATTAGCAATGAAGCAAGAAGCCTAATGCCATCTAAAAAGAGCAAGAAAACAGGGATCATAGTTGGATCTGCTGTTGGAGCTTCGGTTGCAGTGTTGTTTATTGGTCTGTGTTATTGCTGTTGGGTCAACCGCCGGTCAAAGAATGATTCTCACAAGCCTCACCCATGGCTTCCTCTTCCATTATATGGGAACTCTCTTTTTATGTCAACTACTTCTCATAAGAGTGGAACAGCTAGCTGCATCTCTTTAGCTTCTTGCAATCTTGGCCGTTCGTTAACGTTCCAAGAAATCATGGAGGCAACTAATAAGTTTGACGAGAGCTTGCTCCTCGGGGTTGGCGGTTTCGGTAGGGTGTATGAGGGTACTCTGGAGGACGGGACTAAAGTTGCGGTCAAAAGAGGAAACCCGAGATCCGGACAAGGCCTTGCGGAGTTCAGAACTGAGATTGAAATGTTGTCGAAGCTCCGCCATCGTCACCTAGTGTCCCTCATCGCTTATTGCGATGAACGGTCAGAAATGATTCTAGTATACGAGTACATGGCAAATGGGCCCCTCAGGAGCCACCTGTACGGCTCAGATCTCCCACCTCTTACATGGAAGCAACGACTTGAAATTTGCATCGGGGCTGCTAGGGGCCTACACTATCTCCACACGGGTGCAGCTCAAAGTGTAATACACCGAGATGTGAAGACAACAAACATACTCTTGGACGAGAACTTAGTGGCAAAAGTTGCCGACTTTGGCCTCTCGAAAACCGGGCCCGCTCTTGATCAGACGCATGTGAGCACTGCTGTAAAGGGTAGTTTCGGGTACCTCGATCCTGAGTACTTCAGAAGGCAACAACTCACCGAAAAATCGGATGTGTATTCATTTGGAGTTGTTTTGATGGAAGTTCTTTGTACAAGACCGGCTTTGAACCCGGTTCTTCCTAGAGAGCAAGTAAATATAGCGGAATGGGCAATGACGTGGCAAAAGAAGGGGATGTTGGATCAAATCATGGACGTTAATCTTTCTGGGAAAGTGAGCCCAGCTTCTTTGAAGAAGTTTGGGGAAACTGCCGAGAAGTGTTTGGCTGAGTATGGCGTTGATAGGCCTTCAATGGGGGATGTTTTGTGGAACTTGGAGTACGCATTGCAGCTTGAAGAAACGTCGTTAGCTCTAATGGAACCTGAAGATAACAGCACTAACCATATTTCAATGACTCCACTTGAGCCATTTGATAATAGTGTGAGTATGATTGAAGGGGTCAACTCGGGCACAGATGACGATGCAGAGGAGGCTGTTACTAGTACCGTTTTCTCTCAGCTGGCGAATCCTCGAGGAAGATGA

Network for GWHGAAZE002731

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0185

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	35	372	2.30E-41
PF07714.18	PK_Tyr_Ser-Thr	481	689	1.10E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.608
	SRR3591706	second leaf	5.947
	SRR3591707	mature leaf	0.249
	SRR3591708	Shoot apex	16.897
	SRR3591709	Stem	11.427
	SRR3591710	White floral bud	14.554
	SRR3591711	White flower	7.838
	SRR3591712	Green floral bud	22.009
	SRR3591713	Yellow flower	1.326
SRP173429	SRR8316895	Juvenile bud stage	35.651
	SRR8316896	Juvenile bud stage	28.155
	SRR8316897	Juvenile bud stage	25.099
	SRR8316894	Third green stage	11.819
	SRR8316900	Third green stage	26.367
	SRR8316901	Third green stage	36.092
	SRR8316898	Complete white stage	4.044
	SRR8316899	Complete white stage	56.153
	SRR8316903	Complete white stage	6.556
	SRR8316902	Silver flowering stage	4.217
	SRR8316904	Silver flowering stage	2.138
	SRR8316905	Silver flowering stage	1.163
	SRR8316906	Gold flowering stage	1.205
	SRR8316907	Gold flowering stage	1.206
	SRR8316908	Gold flowering stage	1.245
SRP132670	SRR6706286	Control	29.039
	SRR6706287	Light intensity 50%	41.934
	SRR6706288	Light intensity 20%	45.663
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.000
	CNS0095593	Slightly white alabastrum(diploid) 2	28.444
	CNS0095594	Slightly white alabastrum(diploid) 3	20.284
	CNS0095595	Whole white alabastrum(diploid) 2	16.392
	CNS0095596	Whole white alabastrum(diploid) 3	10.954
	CNS0095597	Whole white alabastrum(diploid) 4	14.223
	CNS0095598	Silvery flower (diploied) 1	13.836
	CNS0095599	Silvery flower (diploied) 2	17.878
	CNS0095600	Silvery flower (diploied) 3	15.375
	CNS0095601	Golden flower (diploid) 1	18.088
	CNS0095602	Golden flower (diploid) 2	16.325
	CNS0095603	Golden flower (diploid) 3	15.653
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.163
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.353
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.623
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.950
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.104
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.336
	CNS0095610	Silvery flower (tetraploid) 1	4.664
	CNS0095611	Silvery flower (tetraploid) 2	3.089
	CNS0095612	Silvery flower (tetraploid) 3	3.921
	CNS0095613	Golden flower (tetraploid) 1	0.299
	CNS0095614	Golden flower (tetraploid) 2	2.305
	CNS0095615	Golden flower (tetraploid) 3	2.781
CRA001975	CRR073297	Stem 1	25.633
	CRR073298	Stem 2	21.932
	CRR073299	Stem 3	22.014
	CRR073300	Leaf 1	44.543
	CRR073301	Leaf 2	52.809
	CRR073302	Leaf 3	30.694
	CRR073303	Juvenile bud 1	40.954
	CRR073304	Juvenile bud 2	31.324
	CRR073305	Juvenile bud 3	86.659
	CRR073306	Third green 1	23.564
	CRR073307	Third green 2	25.695
	CRR073308	Third green 3	24.813
	CRR073309	Second white 1	0.918
	CRR073310	Second white 2	0.670
	CRR073311	Second white 3	0.385
	CRR073312	Silver flowering 1	0.247
	CRR073313	Silver flowering 2	0.440
	CRR073314	Silver flowering 3	0.150
	CRR073315	Gold flowering 1	22.016
	CRR073316	Gold flowering 2	32.228
	CRR073317	Gold flowering 3	17.787
	CRR073318	Tawny withering 1	25.829
	CRR073319	Tawny withering 2	17.941
	CRR073320	Tawny withering 3	31.407