Detail information of GWHGAAZE002740


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010278388.11.2163E-171PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like [Nelumbo nucifera]
Swissprottr|P27489|CB23_SOLLC1E-168Chlorophyll a-b binding protein 13, chloroplastic (Precursor)
trEMBLtr|F6H2E4|F6H2E4_VITVI5E-172Putative uncharacterized protein {ECO:0000313|EMBL:CCB46388.1}
TAIR10AT5G54270.13E-125light-harvesting chlorophyll B-binding protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8533905785340161-
GWHAAZE00000001mRNA8533905785340161-
GWHAAZE00000001exon8534006385340161-
GWHAAZE00000001exon8533977385339934-
GWHAAZE00000001exon8533905785339678-
GWHAAZE00000001CDS8534006385340161-
GWHAAZE00000001CDS8533977385339934-
GWHAAZE00000001CDS8533916985339678-
GWHAAZE00000001three_prime_UTR8533905785339168-
Transcript Sequence

Network for GWHGAAZE002740

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00504.22Chloroa_b-bind552221.10E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08914LHCB3 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf535.959
SRR3591706second leaf3300.992
SRR3591707mature leaf2714.865
SRR3591708Shoot apex1069.208
SRR3591709Stem283.537
SRR3591710White floral bud31.426
SRR3591711White flower36.722
SRR3591712Green floral bud26.138
SRR3591713Yellow flower3.925
SRP173429 SRR8316895Juvenile bud stage 193.278
SRR8316896Juvenile bud stage 145.784
SRR8316897Juvenile bud stage 65.623
SRR8316894Third green stage 60.682
SRR8316900Third green stage 127.871
SRR8316901Third green stage 128.746
SRR8316898Complete white stage 6.733
SRR8316899Complete white stage 60.046
SRR8316903Complete white stage 21.556
SRR8316902Silver flowering stage1.199
SRR8316904Silver flowering stage7.673
SRR8316905Silver flowering stage0.277
SRR8316906Gold flowering stage 0.929
SRR8316907Gold flowering stage 0.897
SRR8316908Gold flowering stage 3.297
SRP132670SRR6706286Control105.343
SRR6706287Light intensity 50%94.582
SRR6706288Light intensity 20%98.820
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1205.342
CNS0095593Slightly white alabastrum(diploid) 2153.806
CNS0095594Slightly white alabastrum(diploid) 3167.725
CNS0095595Whole white alabastrum(diploid) 297.326
CNS0095596Whole white alabastrum(diploid) 392.952
CNS0095597Whole white alabastrum(diploid) 467.857
CNS0095598Silvery flower (diploied) 1230.722
CNS0095599Silvery flower (diploied) 2240.903
CNS0095600Silvery flower (diploied) 338.186
CNS0095601Golden flower (diploid) 1190.683
CNS0095602Golden flower (diploid) 284.758
CNS0095603Golden flower (diploid) 383.597
CNS0095604Slightly white alabastrum(tetraploid) 1112.926
CNS0095605Slightly white alabastrum(tetraploid) 2114.647
CNS0095606Slightly white alabastrum(tetraploid) 3188.958
CNS0095607Whole white alabastrum(tetraploid) 193.232
CNS0095608Whole white alabastrum(tetraploid) 238.244
CNS0095609Whole white alabastrum(tetraploid) 360.297
CNS0095610Silvery flower (tetraploid) 140.750
CNS0095611Silvery flower (tetraploid) 237.161
CNS0095612Silvery flower (tetraploid) 38.176
CNS0095613Golden flower (tetraploid) 13.767
CNS0095614Golden flower (tetraploid) 235.401
CNS0095615Golden flower (tetraploid) 310.803
CRA001975CRR073297Stem 122.991
CRR073298Stem 221.673
CRR073299Stem 335.290
CRR073300Leaf 117.361
CRR073301Leaf 228.853
CRR073302Leaf 329.473
CRR073303Juvenile bud 19.006
CRR073304Juvenile bud 26.851
CRR073305Juvenile bud 39.495
CRR073306Third green 11.450
CRR073307Third green 20.258
CRR073308Third green 31.203
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.124
CRR073312Silver flowering 10.080
CRR073313Silver flowering 20.655
CRR073314Silver flowering 30.362
CRR073315Gold flowering 1142.314
CRR073316Gold flowering 2127.388
CRR073317Gold flowering 3111.928
CRR073318Tawny withering 126.413
CRR073319Tawny withering 215.619
CRR073320Tawny withering 327.757