Detail information of GWHGAAZE002741


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14710.10unnamed protein product [Coffea canephora]
COGYP_007713204.10.000004hypothetical protein MMALV_05390
Swissprottr|Q9SKT6|GAUTA_ARATH0Probable galacturonosyltransferase 10
trEMBLtr|A0A068V1T1|A0A068V1T1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_91 {ECO:0000313|EMBL:CDP14710.1}
TAIR10AT2G20810.14E-171galacturonosyltransferase 10

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8534361185344804-
GWHAAZE00000001mRNA8534361185344804-
GWHAAZE00000001exon8534407385344804-
GWHAAZE00000001exon8534361185343997-
GWHAAZE00000001CDS8534407385344804-
GWHAAZE00000001CDS8534361185343997-
Transcript Sequence

Network for GWHGAAZE002741

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01501.21Glyco_transf_8993463.20E-65
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13648GAUT Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.859
SRR3591706second leaf11.850
SRR3591707mature leaf8.222
SRR3591708Shoot apex9.374
SRR3591709Stem7.424
SRR3591710White floral bud8.007
SRR3591711White flower10.722
SRR3591712Green floral bud14.371
SRR3591713Yellow flower10.407
SRP173429 SRR8316895Juvenile bud stage 6.649
SRR8316896Juvenile bud stage 8.850
SRR8316897Juvenile bud stage 4.642
SRR8316894Third green stage 6.070
SRR8316900Third green stage 11.114
SRR8316901Third green stage 13.641
SRR8316898Complete white stage 3.975
SRR8316899Complete white stage 17.673
SRR8316903Complete white stage 6.041
SRR8316902Silver flowering stage2.840
SRR8316904Silver flowering stage5.577
SRR8316905Silver flowering stage2.296
SRR8316906Gold flowering stage 8.330
SRR8316907Gold flowering stage 9.083
SRR8316908Gold flowering stage 10.452
SRP132670SRR6706286Control7.430
SRR6706287Light intensity 50%8.183
SRR6706288Light intensity 20%8.712
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.844
CNS0095593Slightly white alabastrum(diploid) 210.520
CNS0095594Slightly white alabastrum(diploid) 36.121
CNS0095595Whole white alabastrum(diploid) 27.748
CNS0095596Whole white alabastrum(diploid) 39.958
CNS0095597Whole white alabastrum(diploid) 48.269
CNS0095598Silvery flower (diploied) 17.036
CNS0095599Silvery flower (diploied) 25.619
CNS0095600Silvery flower (diploied) 310.932
CNS0095601Golden flower (diploid) 17.535
CNS0095602Golden flower (diploid) 211.891
CNS0095603Golden flower (diploid) 312.888
CNS0095604Slightly white alabastrum(tetraploid) 110.836
CNS0095605Slightly white alabastrum(tetraploid) 28.729
CNS0095606Slightly white alabastrum(tetraploid) 312.994
CNS0095607Whole white alabastrum(tetraploid) 16.272
CNS0095608Whole white alabastrum(tetraploid) 26.772
CNS0095609Whole white alabastrum(tetraploid) 38.015
CNS0095610Silvery flower (tetraploid) 18.444
CNS0095611Silvery flower (tetraploid) 28.383
CNS0095612Silvery flower (tetraploid) 310.045
CNS0095613Golden flower (tetraploid) 15.303
CNS0095614Golden flower (tetraploid) 27.461
CNS0095615Golden flower (tetraploid) 39.677
CRA001975CRR073297Stem 110.582
CRR073298Stem 29.311
CRR073299Stem 38.637
CRR073300Leaf 19.198
CRR073301Leaf 29.069
CRR073302Leaf 310.278
CRR073303Juvenile bud 18.781
CRR073304Juvenile bud 211.573
CRR073305Juvenile bud 310.513
CRR073306Third green 12.602
CRR073307Third green 21.920
CRR073308Third green 33.097
CRR073309Second white 17.303
CRR073310Second white 27.521
CRR073311Second white 35.743
CRR073312Silver flowering 18.449
CRR073313Silver flowering 29.915
CRR073314Silver flowering 38.569
CRR073315Gold flowering 111.456
CRR073316Gold flowering 212.025
CRR073317Gold flowering 39.937
CRR073318Tawny withering 17.659
CRR073319Tawny withering 26.446
CRR073320Tawny withering 37.822