Gene detail

Detail information of GWHGAAZE002749

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010277907.1	0	PREDICTED: probable serine/threonine-protein kinase abkC isoform X1 [Nelumbo nucifera]
COG	YP_003825897.1	3E-37	2-polyprenylphenol 6-hydroxylase
Swissprot	tr\|Q8RWG1\|Y4139_ARATH	6E-21	Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic (Precursor)
trEMBL	tr\|A0A061FE64\|A0A061FE64_THECC	0	AarF domain-containing kinase isoform 1 {ECO:0000313\|EMBL:EOY12764.1}
TAIR10	AT1G11390.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	85496158	85499320	+
GWHAAZE00000001	mRNA	85496158	85499320	+
GWHAAZE00000001	exon	85496158	85497114	+
GWHAAZE00000001	exon	85497236	85497496	+
GWHAAZE00000001	exon	85498112	85498381	+
GWHAAZE00000001	exon	85498688	85498843	+
GWHAAZE00000001	exon	85499201	85499320	+
GWHAAZE00000001	CDS	85496158	85497114	+
GWHAAZE00000001	CDS	85497236	85497496	+
GWHAAZE00000001	CDS	85498112	85498381	+
GWHAAZE00000001	CDS	85498688	85498843	+
GWHAAZE00000001	CDS	85499201	85499320	+

Transcript Sequence
>GWHTAAZE002753 ATTTTGGCATTTAGTAATTGTAGGAGGGTAGCTAATTCCCTTCTTCCCAGTCGAAAGACCCTCTACTCACAAGTAAATAACCATGGGATGACATCTGCAAATGGGATCCCTTACTCCATATACAGATTCTATTCACAATATAAACTTTCAAACAGAGGACTTGCTTCACGCACATTATGCAAAGCAAAGGAGAGCTTATGGAAGAGTAGAGGTTTTAGTAACGTACATGTTCTTCTGGCCGATAATAGAATTTCAAGGCATACAGGAATCGCCTTTAAAAGGCTTTCTCAAATTTGTTCCTTCAGTGGGCCAATCGTGCCACCAATAAGTAGGATAGCTTGTGCAGTGAGCCTTGCTTTAAGCCGCTCACACTTGTTAGCTCCGGGTATTTTTGCCTTCATCCTTGGTGAACAAGCTTGGACGGGGAGAATATGCGCACAAGCTGAAGGTCTCCCAGCGAAGGACACACTGTACATGCATGCACAAGATGGGCACATTTATTTAACATCATTTGTGTTTTCACTTTTGGAGGGATTGATATTGTTCTTAAGAGCCATATATTTAGCTATTTTGTTCTCGCCATGCATACTTATGGCTCCTTTTGCCGATTCCCTTGGCATCGAGTTTAGAAAGAAATGGCTTCGTGTTGTGCATCTTACATTAGAAAATGCAGGCCCGGCATTTATTAAATGGGGTCAGTGGGCAGCAACAAGGCCGGATCTCTTCCCTAGAGATCTCTGTTCCAAGCTTGCAAAGCTTCAAACCAAAGCACCATCACATAGCTATGCTTACACAAAAAGAACTATCGAAAAGGCATTTGGCCGCAACTTGGCTGAAATATTTGAAAATTTTGAAGAGGAACCTGTAGCTTCTGGAAGTGTTGCCCAAATTCATCGTGCTACTTTGAAATTCCAATATCCGGGGCAACGGATTAAGCCTATTCTTGTTGCTGTGAAGCAGTTTGCTGTGTTTATGATGTCTCAAGTTGATCTTGCAAGGGAGGCAGCTAATCTGAGTCGTTTTATTTACAATTTCCGCAGATGGAGGGATGTATCGTTCCCAAAGCCTCTGTATCCGTTGGTGCATCCAGCTGTATTAGTGGAAACTTATGAGCATGGTGATAGTATTCTGCACTATGTCGATGAGCTGGAAGGGCATGAACCTATTAAAAGTGGCCTTGCTCACATTGGGACTCATGCACTTTTAAAGATGCTTCTGGTAGACAATTTTATCCATGCGGATATGCATCCAGGGAATATTCTTGTTAGGGTGTCTGGGAAGAAAGCTCCTCAAAATGGGCTGTTTAAATCTAGGCCTCATGTCATTTTCCTTGACGTAGGAATGACAGCTGAACTATCGAAGAATGATCGAGTCAATCTACTGGAGTTCTTTAAGGCAGTGGCACTTCGGGATGGTCACTCTGCTGCAGAGTACACACTCAAGTTATCAAAACAACAGAATTGCCCGAATCCAGGGGCTTTCATTAAGGATGTAGAGAAATCGTTTCTATTATGGGGTTCAGCGCAAGGTGATTCCATTCATCCTGCTGACTGCATGCAACAATTGCTTGAGCAAGTGAGGCGTCATAGAGTTAATATTGATGGCAATGTATGCACTGTGATGGTAACCACTTTGGTCTTGGAGGGCTGGCAGCGAAAACTTGATGCGGAGTATGATGTGATGCATACATTGCAAACATTGTTATTCAAAGTCGACTGGGCAGAGTCTCTCATCTACACTATCGAAGGACTGATGGCCCCCTGA

Network for GWHGAAZE002749

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0018
CFinderModule0239

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03109.17	ABC1	272	308	4.50E-09
PF03109.17	ABC1	314	356	7.20E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.122
	SRR3591706	second leaf	10.780
	SRR3591707	mature leaf	9.021
	SRR3591708	Shoot apex	11.326
	SRR3591709	Stem	14.493
	SRR3591710	White floral bud	22.401
	SRR3591711	White flower	18.734
	SRR3591712	Green floral bud	23.935
	SRR3591713	Yellow flower	16.337
SRP173429	SRR8316895	Juvenile bud stage	11.864
	SRR8316896	Juvenile bud stage	16.906
	SRR8316897	Juvenile bud stage	9.272
	SRR8316894	Third green stage	7.697
	SRR8316900	Third green stage	26.113
	SRR8316901	Third green stage	24.501
	SRR8316898	Complete white stage	7.452
	SRR8316899	Complete white stage	27.230
	SRR8316903	Complete white stage	13.426
	SRR8316902	Silver flowering stage	5.878
	SRR8316904	Silver flowering stage	10.031
	SRR8316905	Silver flowering stage	3.340
	SRR8316906	Gold flowering stage	12.269
	SRR8316907	Gold flowering stage	13.994
	SRR8316908	Gold flowering stage	16.273
SRP132670	SRR6706286	Control	21.685
	SRR6706287	Light intensity 50%	21.380
	SRR6706288	Light intensity 20%	22.701
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.881
	CNS0095593	Slightly white alabastrum(diploid) 2	17.369
	CNS0095594	Slightly white alabastrum(diploid) 3	19.074
	CNS0095595	Whole white alabastrum(diploid) 2	23.746
	CNS0095596	Whole white alabastrum(diploid) 3	25.478
	CNS0095597	Whole white alabastrum(diploid) 4	27.217
	CNS0095598	Silvery flower (diploied) 1	15.431
	CNS0095599	Silvery flower (diploied) 2	12.588
	CNS0095600	Silvery flower (diploied) 3	20.993
	CNS0095601	Golden flower (diploid) 1	10.169
	CNS0095602	Golden flower (diploid) 2	17.596
	CNS0095603	Golden flower (diploid) 3	16.920
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.476
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.255
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.890
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.886
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.409
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.453
	CNS0095610	Silvery flower (tetraploid) 1	20.865
	CNS0095611	Silvery flower (tetraploid) 2	22.731
	CNS0095612	Silvery flower (tetraploid) 3	22.114
	CNS0095613	Golden flower (tetraploid) 1	12.513
	CNS0095614	Golden flower (tetraploid) 2	18.530
	CNS0095615	Golden flower (tetraploid) 3	13.781
CRA001975	CRR073297	Stem 1	15.268
	CRR073298	Stem 2	15.305
	CRR073299	Stem 3	10.615
	CRR073300	Leaf 1	21.387
	CRR073301	Leaf 2	16.326
	CRR073302	Leaf 3	13.299
	CRR073303	Juvenile bud 1	17.983
	CRR073304	Juvenile bud 2	13.056
	CRR073305	Juvenile bud 3	16.314
	CRR073306	Third green 1	6.704
	CRR073307	Third green 2	6.702
	CRR073308	Third green 3	8.742
	CRR073309	Second white 1	6.876
	CRR073310	Second white 2	8.556
	CRR073311	Second white 3	7.408
	CRR073312	Silver flowering 1	8.699
	CRR073313	Silver flowering 2	7.025
	CRR073314	Silver flowering 3	7.553
	CRR073315	Gold flowering 1	5.789
	CRR073316	Gold flowering 2	6.730
	CRR073317	Gold flowering 3	5.307
	CRR073318	Tawny withering 1	12.353
	CRR073319	Tawny withering 2	13.468
	CRR073320	Tawny withering 3	14.210