Detail information of GWHGAAZE002750


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284361.11.6604E-134PREDICTED: cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic [Vitis vinifera]
COGYP_007114877.14E-85Cytochrome b6-f complex iron-sulfur subunit
Swissprottr|Q69S39|UCRIA_ORYSJ2E-119Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (Precursor)
trEMBLtr|A5BX41|A5BX41_VITVI6E-135Cytochrome b6-f complex iron-sulfur subunit {ECO:0000256|RuleBase:RU004496}
TAIR10AT4G03280.11E-86photosynthetic electron transfer C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8550125185504742-
GWHAAZE00000001mRNA8550125185504742-
GWHAAZE00000001exon8550469585504742-
GWHAAZE00000001exon8550368485503928-
GWHAAZE00000001exon8550192985502046-
GWHAAZE00000001exon8550148085501662-
GWHAAZE00000001exon8550125185501352-
GWHAAZE00000001CDS8550469585504742-
GWHAAZE00000001CDS8550368485503928-
GWHAAZE00000001CDS8550192985502046-
GWHAAZE00000001CDS8550148085501662-
GWHAAZE00000001CDS8550125185501352-
Transcript Sequence

Network for GWHGAAZE002750

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00355.27Rieske1382002.90E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02636petC Metabolic pathways map01100
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016020cellular_componentmembrane
GO:0042651cellular_componentthylakoid membrane
GO:0016491molecular_functionoxidoreductase activity
GO:0051537molecular_function2 iron, 2 sulfur cluster binding
GO:0008121molecular_functionubiquinol-cytochrome-c reductase activity
GO:0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
GO:0009496molecular_functionplastoquinol--plastocyanin reductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.447
SRR3591706second leaf27.872
SRR3591707mature leaf205.081
SRR3591708Shoot apex14.875
SRR3591709Stem54.783
SRR3591710White floral bud9.209
SRR3591711White flower13.535
SRR3591712Green floral bud2.865
SRR3591713Yellow flower8.406
SRP173429 SRR8316895Juvenile bud stage 6.091
SRR8316896Juvenile bud stage 5.813
SRR8316897Juvenile bud stage 3.563
SRR8316894Third green stage 0.963
SRR8316900Third green stage 4.201
SRR8316901Third green stage 5.094
SRR8316898Complete white stage 2.191
SRR8316899Complete white stage 8.989
SRR8316903Complete white stage 6.114
SRR8316902Silver flowering stage2.422
SRR8316904Silver flowering stage2.347
SRR8316905Silver flowering stage0.724
SRR8316906Gold flowering stage 3.321
SRR8316907Gold flowering stage 3.753
SRR8316908Gold flowering stage 2.939
SRP132670SRR6706286Control9.228
SRR6706287Light intensity 50%6.238
SRR6706288Light intensity 20%6.200
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.061
CNS0095593Slightly white alabastrum(diploid) 28.897
CNS0095594Slightly white alabastrum(diploid) 37.210
CNS0095595Whole white alabastrum(diploid) 26.940
CNS0095596Whole white alabastrum(diploid) 35.286
CNS0095597Whole white alabastrum(diploid) 45.294
CNS0095598Silvery flower (diploied) 148.560
CNS0095599Silvery flower (diploied) 258.507
CNS0095600Silvery flower (diploied) 323.023
CNS0095601Golden flower (diploid) 173.400
CNS0095602Golden flower (diploid) 245.664
CNS0095603Golden flower (diploid) 340.620
CNS0095604Slightly white alabastrum(tetraploid) 17.026
CNS0095605Slightly white alabastrum(tetraploid) 27.470
CNS0095606Slightly white alabastrum(tetraploid) 310.941
CNS0095607Whole white alabastrum(tetraploid) 16.573
CNS0095608Whole white alabastrum(tetraploid) 23.754
CNS0095609Whole white alabastrum(tetraploid) 36.363
CNS0095610Silvery flower (tetraploid) 112.221
CNS0095611Silvery flower (tetraploid) 219.715
CNS0095612Silvery flower (tetraploid) 310.076
CNS0095613Golden flower (tetraploid) 113.797
CNS0095614Golden flower (tetraploid) 215.114
CNS0095615Golden flower (tetraploid) 38.414
CRA001975CRR073297Stem 111.816
CRR073298Stem 211.975
CRR073299Stem 316.769
CRR073300Leaf 19.955
CRR073301Leaf 213.487
CRR073302Leaf 37.401
CRR073303Juvenile bud 110.732
CRR073304Juvenile bud 26.665
CRR073305Juvenile bud 317.575
CRR073306Third green 11.775
CRR073307Third green 23.314
CRR073308Third green 31.618
CRR073309Second white 13.960
CRR073310Second white 24.328
CRR073311Second white 31.561
CRR073312Silver flowering 12.893
CRR073313Silver flowering 25.198
CRR073314Silver flowering 34.289
CRR073315Gold flowering 1260.804
CRR073316Gold flowering 2281.535
CRR073317Gold flowering 3247.378
CRR073318Tawny withering 164.005
CRR073319Tawny withering 268.305
CRR073320Tawny withering 360.746