Gene detail

Detail information of GWHGAAZE002759

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010644274.1	7.7877E-177	PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Vitis vinifera]
COG	YP_004696643.1	0.000004	serine/threonine protein kinase
Swissprot	tr\|O81832\|Y4729_ARATH	7E-116	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|A0A068UF61\|A0A068UF61_COFCA	1E-174	Coffea canephora DH200=94 genomic scaffold, scaffold_23 {ECO:0000313\|EMBL:CDP06834.1}
TAIR10	AT4G27290.1	1E-100	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	85745213	85747699	+
GWHAAZE00000001	mRNA	85745213	85747699	+
GWHAAZE00000001	exon	85745213	85746479	+
GWHAAZE00000001	exon	85746599	85746718	+
GWHAAZE00000001	exon	85746930	85747048	+
GWHAAZE00000001	exon	85747526	85747699	+
GWHAAZE00000001	CDS	85745213	85746479	+
GWHAAZE00000001	CDS	85746599	85746718	+
GWHAAZE00000001	CDS	85746930	85747048	+
GWHAAZE00000001	CDS	85747526	85747699	+

Transcript Sequence
>GWHTAAZE002763 ATGGAAGAGGGCTTAGTACCTCTGACTCTCTTTGTTTACTCCCTGTTCATTTTGTCATCCATCTTCGAATTCTCCTCTGCAGATAATGATCTGATTAATTCAACCCAATCCATAGCCGATGGGGAGACTTTGGTGTCTTCAGGTACAAGTTTTGAACTTGGTTTCTTTTCCCCAAGTGGATCCACTAACCGGTATTTAGGAATATGGTACAGGAGTTTCCCACAAATCATCGTATGGCTCGCAAACAGGGAACGCCCATTAACAGATTTAGGAGGAGTTCTAATCTTCAGTAGCGACGGAAACCTTATTCTCCTCAATGCCACAAAAAGCATTATCTGGTCATCAAATTCTTCAAGAGCCATACAAAATTCGTTTGCACGACTATTAGATTCGGGGAACCTTGTTCTTGGGGGGAGTAGCGACTTAAATGCCGAAAACAGCATATGGCAAAGCTTTGATTACCCATCAGACACACTTTTACCAGGTATGAAGTTGGGGTGGAACTTCGTTAGTAAGCAAAATCCGTCTTTGACATCATGGAAAAGTCCCAGTGACCCGGCTATCGGAGACTTCACTTATAGGCTTGAAAATCTTGGATTGCCTCAAGCAGTTCTTCGTAAGGGGTCAGAGAAGACATTCCGTACTGGGGCATGGAACGGATTACGATTTAGCGGCGTTTCTACTTTAGGACAAGTTTCTATAACTAACTCTGACGAAATGCTTTATATGCCTGTTAGTGTATCATATATCTCGAGGATTGTGCAAACTCAATCCGGCATCATTGAACACTACGTGCTAAGAGAAGGGAGCTCCGAATGGGTTGTCATCTATAGGACGCCAAGTAACATGTGCGATAATTACGGTCAGTGCGGTCCAAATGGAATTTGTAGAATGGAGGGAAGCCCGACTTGTGAATGCTTGAAAGGATTCGTTCCCAAGAAACAAAGTGAATGGGATGTTCTAATTAGGTCCAGTGGATGTGTGAGGAGCACACCATTAAATTGCCAAAACGGAGACGGATTTGTGGAGCTTAAAAATGTGAAGTCGCCGGATCTGTTGGAGTTTTTGCTGAACAAGAGCATGAACCTCGAGGAGTGCAAGGCCGAGTGCTTGAAGAATTGTTCTTGTATGGCTTTTGCGAATTCAGTTATTACGGATGGTGGCAGTGGATGTTTGATGTGGTTTGATGATTTGATTGATATTCGAGAGTTTTCAGATGAAAATAGTAAGCAAAATATGTATATACGCATGCCAGCTTCCCTACTAGATCATAAAGAAACTAAGAAAAGAAGAGTGCTGATCATAGCGATCATATCAACAGTTTTAGGGGTTCTTTTCCTCTGCTTTTTAAGGTGCAGTAGAATCTGGTGGAGGAAAAAGAAACAAGAAGCAAACAAGGAAGACATAGAGTTGCCTCTTTTTCATCTACACATTATAACAACAGCCACTAATAACTTCTCTTCTACTAATATGGTCGGAAAGGGAGGTTTTGGTTCTGTTTACAAGGGACTTCTCTACCTTCACCACGACTCGAGATTAAGAATTATTCATAGGGATCTCAAAGCCAGCAACGTTTTACTTGATAGCCAGCTAAATCCCAAAATTTCAGACTTTGGCATTGCTAGAATATTTGTTGGAGACCAAATTGAAGCCAAAACAAAGCACGTAATTGGAACATAG

Network for GWHGAAZE002759

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	77	181	2.20E-35
PF00954.21	S_locus_glycop	213	313	2.90E-22
PF08276.12	PAN_2	335	401	6.00E-21
PF00069.26	Pkinase	495	553	3.40E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0048544	biological_process	recognition of pollen
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.972
	SRR3591706	second leaf	0.662
	SRR3591707	mature leaf	1.536
	SRR3591708	Shoot apex	0.576
	SRR3591709	Stem	1.445
	SRR3591710	White floral bud	0.553
	SRR3591711	White flower	1.140
	SRR3591712	Green floral bud	0.271
	SRR3591713	Yellow flower	0.639
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.348
	SRR8316897	Juvenile bud stage	0.367
	SRR8316894	Third green stage	0.026
	SRR8316900	Third green stage	0.139
	SRR8316901	Third green stage	0.061
	SRR8316898	Complete white stage	0.163
	SRR8316899	Complete white stage	0.816
	SRR8316903	Complete white stage	0.401
	SRR8316902	Silver flowering stage	0.089
	SRR8316904	Silver flowering stage	0.252
	SRR8316905	Silver flowering stage	0.153
	SRR8316906	Gold flowering stage	1.266
	SRR8316907	Gold flowering stage	0.232
	SRR8316908	Gold flowering stage	1.127
SRP132670	SRR6706286	Control	0.571
	SRR6706287	Light intensity 50%	0.137
	SRR6706288	Light intensity 20%	0.213
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.163
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.069
	CNS0095595	Whole white alabastrum(diploid) 2	0.286
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.208
	CNS0095598	Silvery flower (diploied) 1	1.394
	CNS0095599	Silvery flower (diploied) 2	0.624
	CNS0095600	Silvery flower (diploied) 3	0.353
	CNS0095601	Golden flower (diploid) 1	1.209
	CNS0095602	Golden flower (diploid) 2	0.574
	CNS0095603	Golden flower (diploid) 3	0.933
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.313
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.316
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.209
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.262
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.057
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.295
	CNS0095610	Silvery flower (tetraploid) 1	0.807
	CNS0095611	Silvery flower (tetraploid) 2	0.599
	CNS0095612	Silvery flower (tetraploid) 3	0.994
	CNS0095613	Golden flower (tetraploid) 1	0.116
	CNS0095614	Golden flower (tetraploid) 2	0.404
	CNS0095615	Golden flower (tetraploid) 3	0.253
CRA001975	CRR073297	Stem 1	0.183
	CRR073298	Stem 2	0.054
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.046
	CRR073302	Leaf 3	0.091
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.040
	CRR073305	Juvenile bud 3	0.062
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.061
	CRR073312	Silver flowering 1	0.105
	CRR073313	Silver flowering 2	0.035
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.350
	CRR073318	Tawny withering 1	1.998
	CRR073319	Tawny withering 2	2.381
	CRR073320	Tawny withering 3	0.138