Gene detail

Detail information of GWHGAAZE002764

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004251482.1	4.8039E-172	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Solanum lycopersicum]
COG	YP_006980426.1	0.0000007	kinase domain-containing protein
Swissprot	tr\|O81832\|Y4729_ARATH	1E-134	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|M1BNX0\|M1BNX0_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400049533}
TAIR10	AT4G27290.1	4E-116	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	85830913	85834494	-
GWHAAZE00000001	mRNA	85830913	85834494	-
GWHAAZE00000001	exon	85830913	85831200	-
GWHAAZE00000001	exon	85831884	85832034	-
GWHAAZE00000001	exon	85832119	85832198	-
GWHAAZE00000001	exon	85832820	85832980	-
GWHAAZE00000001	exon	85833121	85833258	-
GWHAAZE00000001	exon	85833362	85833475	-
GWHAAZE00000001	exon	85833609	85834494	-
GWHAAZE00000001	CDS	85833609	85834494	-
GWHAAZE00000001	CDS	85833362	85833475	-
GWHAAZE00000001	CDS	85833121	85833258	-
GWHAAZE00000001	CDS	85832820	85832980	-
GWHAAZE00000001	CDS	85832119	85832198	-
GWHAAZE00000001	CDS	85831884	85832034	-
GWHAAZE00000001	CDS	85830913	85831200	-

Transcript Sequence
>GWHTAAZE002768 ATGGGATTTTTCAGCCCGGGCGAATCCAAGAACCGATACGTGGGGATATGGTATAAGAAAATATCTATTCAAACTGTGGTTTGGGTTGCCAATAGAGAAACTCCAATCACCAATTCATCAGGTGTGTTGAAGATCATCAATCCCGGAATTATTGCTCTTGAACTAAATGATTCGAATAACATCATATGGTCTTCCAATACATCAAGGTCTGCACGTAATCCAATTGCTCACCTTCTGGACTCGGGTAATCTTGTTGTAAAAGATGCAAATGATAATAACCCGGAGAATTTTTACTGGCAGAGTTTTGATTATCCTTGTGATACTCTTTTACCGGGCATGAAGCTGGGAAAGAACTTTGTGACTGGCCTAGAGAGATATCTTTCGTCGTGGAAGAGTGATGATGATCCAGCTCCAGGTGATTTTACGTATCACTGTGATCCTAGCGGATACCCACAAAATATTCTGAAGAAGGGTTCAGTTGAGAAGTATAGGTCTGGATCTTGGAATGGTCTTCGTTTTAGTGGGAGGCCAAGCTTAGCCCCGAATTTTATTTTCACATATACACTTGTTTTCAACGAGGAGGAGGTGTACTATAGTTATGAGCTCCAAAACAATTCGGTTGTTTCAAGATTTGTGTTGAATCCGTATGGCACTGCACAACGGTGGACATGGGTTGATCGAACTCGGGGTTGGGTCCCTTACCTAACTGCACCGACAGATAACTGCGATACTTATTTATTGTGCGGTCCTTATGGTAGTTGCAATATTGGCAGGTCCCCTGTATGTGGGTGTTTGAATAAATTTGTGCCGAAATACCAGGAGAATTGGGCTAGGACTGATTGGACGGATGGTTGTGTTCGAAAGATGCCATTGGATTGCCAAAATGACATAAGAAATGGAGGAAGTGGGTGTTTGCGTTGGTTTGGTGATTTGCTTGACATTAGAGAATTCTCCGAAGCCGGTCAAGATATCTATGTGAGGATGGCCTCTTCTGAGATAGTTCCCAAATTTGGCTCCAAAGGAAAGAAAGGAAAAATTATCAAAGTGAGTTTGCCACTAATAGCTGGAATGGTACTGCTAAGCTTGACTCTGGCATGGTATGCGCGAAAAAAGAAGAATTTGCGGCTCGAGAGAAAAGGGAGACTGGGATATGACTTGGAAGAAGATTACTACACCCGTCAAAGCAAAAAGGAAGAACTAGAGCTTCCATTGTTTGGCTTATCTACAGTAGCTAATGCTACAAATAACTTTTCGATGGACAATAAACTTGGAGAGGGTGGATTCGGACCAGTTTACCAAATATCAGACTTCGGCCTGGCTAGAATCTTTGGAGGAGATGAAAGTGGGGGATTAAAAACAAAAAGAGTGGTTGGAACATACGGCTACATGTCACCCGAATATGCGATAGATGGGATTTTCTCTGTAAAATCGGATGTATTTAGCTTCGGAGTTCTGGTACTGGAGATTGTCAGTGGAAAGAGAAACAGAGGATTCATTCATCCAGACCACAGCCATAACCTTCCAGGACATGCATGGTTACTCCATAGAGAAGGCAGGTCCAAGGAACTGGCCGATCATGCGGCCATGGGTGACTCATGTGGTCTAGACGAAGTAGTACGATCAATCGAGGTGGGTCTATTGTGCGTTCAACAATGTCCAGAAGATAGGCCTAGCATGTCATCCGTGGTTCTGATGTTGGGTAGTAAAGGTTCACTGCCTCAACCTAAACAGCCTGGCTTTTTTACTGAAAGGACTATACTTGAAGCTCAACGTTCAATCCATGGAATCAGCAATACACTATTAATAGATGGTCGATAG

Network for GWHGAAZE002764

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	25	131	5.50E-38
PF00954.21	S_locus_glycop	163	271	2.20E-30
PF07714.18	PK_Tyr_Ser-Thr	432	563	2.60E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0048544	biological_process	recognition of pollen
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.483
	SRR3591706	second leaf	8.225
	SRR3591707	mature leaf	27.137
	SRR3591708	Shoot apex	4.829
	SRR3591709	Stem	11.170
	SRR3591710	White floral bud	10.854
	SRR3591711	White flower	24.874
	SRR3591712	Green floral bud	3.809
	SRR3591713	Yellow flower	18.053
SRP173429	SRR8316895	Juvenile bud stage	3.976
	SRR8316896	Juvenile bud stage	6.243
	SRR8316897	Juvenile bud stage	1.275
	SRR8316894	Third green stage	2.984
	SRR8316900	Third green stage	8.620
	SRR8316901	Third green stage	8.489
	SRR8316898	Complete white stage	12.227
	SRR8316899	Complete white stage	35.525
	SRR8316903	Complete white stage	20.182
	SRR8316902	Silver flowering stage	19.426
	SRR8316904	Silver flowering stage	31.656
	SRR8316905	Silver flowering stage	13.995
	SRR8316906	Gold flowering stage	30.620
	SRR8316907	Gold flowering stage	31.456
	SRR8316908	Gold flowering stage	31.798
SRP132670	SRR6706286	Control	10.671
	SRR6706287	Light intensity 50%	9.593
	SRR6706288	Light intensity 20%	7.948
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.222
	CNS0095593	Slightly white alabastrum(diploid) 2	2.202
	CNS0095594	Slightly white alabastrum(diploid) 3	2.309
	CNS0095595	Whole white alabastrum(diploid) 2	3.558
	CNS0095596	Whole white alabastrum(diploid) 3	1.418
	CNS0095597	Whole white alabastrum(diploid) 4	4.532
	CNS0095598	Silvery flower (diploied) 1	22.091
	CNS0095599	Silvery flower (diploied) 2	19.402
	CNS0095600	Silvery flower (diploied) 3	41.516
	CNS0095601	Golden flower (diploid) 1	17.096
	CNS0095602	Golden flower (diploid) 2	39.148
	CNS0095603	Golden flower (diploid) 3	42.512
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.448
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.339
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.666
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.082
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.816
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.499
	CNS0095610	Silvery flower (tetraploid) 1	15.415
	CNS0095611	Silvery flower (tetraploid) 2	10.417
	CNS0095612	Silvery flower (tetraploid) 3	2.650
	CNS0095613	Golden flower (tetraploid) 1	5.790
	CNS0095614	Golden flower (tetraploid) 2	16.248
	CNS0095615	Golden flower (tetraploid) 3	5.468
CRA001975	CRR073297	Stem 1	4.186
	CRR073298	Stem 2	3.362
	CRR073299	Stem 3	2.747
	CRR073300	Leaf 1	5.701
	CRR073301	Leaf 2	5.364
	CRR073302	Leaf 3	3.370
	CRR073303	Juvenile bud 1	4.844
	CRR073304	Juvenile bud 2	4.281
	CRR073305	Juvenile bud 3	7.449
	CRR073306	Third green 1	5.675
	CRR073307	Third green 2	4.916
	CRR073308	Third green 3	7.340
	CRR073309	Second white 1	5.959
	CRR073310	Second white 2	10.879
	CRR073311	Second white 3	10.482
	CRR073312	Silver flowering 1	2.904
	CRR073313	Silver flowering 2	2.386
	CRR073314	Silver flowering 3	5.137
	CRR073315	Gold flowering 1	2.007
	CRR073316	Gold flowering 2	3.185
	CRR073317	Gold flowering 3	1.978
	CRR073318	Tawny withering 1	5.213
	CRR073319	Tawny withering 2	5.505
	CRR073320	Tawny withering 3	3.623