Detail information of GWHGAAZE002771


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009615928.10PREDICTED: indole-3-acetic acid-amido synthetase GH3.6 isoform X1 [Nicotiana tomentosiformis]
COGYP_003444757.12E-25alpha-L-glutamate ligase
Swissprottr|Q9LSQ4|GH36_ARATH0Indole-3-acetic acid-amido synthetase GH3.6
trEMBLtr|A0A067KS90|A0A067KS90_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP39002.1}
TAIR10AT5G54510.10Auxin-responsive GH3 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8598942885991330-
GWHAAZE00000001mRNA8598942885991330-
GWHAAZE00000001exon8598942885989885-
GWHAAZE00000001exon8598999085990918-
GWHAAZE00000001exon8599101485991330-
GWHAAZE00000001CDS8599101485991330-
GWHAAZE00000001CDS8598999085990918-
GWHAAZE00000001CDS8598942885989885-
Transcript Sequence

Network for GWHGAAZE002771

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03321.14GH3265672.10E-196
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14487GH3 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.708
SRR3591706second leaf0.756
SRR3591707mature leaf0.106
SRR3591708Shoot apex5.376
SRR3591709Stem0.567
SRR3591710White floral bud3.307
SRR3591711White flower2.554
SRR3591712Green floral bud30.096
SRR3591713Yellow flower0.387
SRP173429 SRR8316895Juvenile bud stage 23.050
SRR8316896Juvenile bud stage 33.116
SRR8316897Juvenile bud stage 16.083
SRR8316894Third green stage 10.319
SRR8316900Third green stage 29.575
SRR8316901Third green stage 36.537
SRR8316898Complete white stage 0.731
SRR8316899Complete white stage 3.564
SRR8316903Complete white stage 3.385
SRR8316902Silver flowering stage3.989
SRR8316904Silver flowering stage4.785
SRR8316905Silver flowering stage2.663
SRR8316906Gold flowering stage 17.098
SRR8316907Gold flowering stage 8.292
SRR8316908Gold flowering stage 2.211
SRP132670SRR6706286Control82.125
SRR6706287Light intensity 50%52.372
SRR6706288Light intensity 20%51.829
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.522
CNS0095593Slightly white alabastrum(diploid) 210.519
CNS0095594Slightly white alabastrum(diploid) 327.156
CNS0095595Whole white alabastrum(diploid) 213.964
CNS0095596Whole white alabastrum(diploid) 318.662
CNS0095597Whole white alabastrum(diploid) 424.099
CNS0095598Silvery flower (diploied) 16.327
CNS0095599Silvery flower (diploied) 26.751
CNS0095600Silvery flower (diploied) 35.631
CNS0095601Golden flower (diploid) 13.363
CNS0095602Golden flower (diploid) 28.321
CNS0095603Golden flower (diploid) 38.248
CNS0095604Slightly white alabastrum(tetraploid) 14.765
CNS0095605Slightly white alabastrum(tetraploid) 27.944
CNS0095606Slightly white alabastrum(tetraploid) 31.714
CNS0095607Whole white alabastrum(tetraploid) 18.178
CNS0095608Whole white alabastrum(tetraploid) 27.966
CNS0095609Whole white alabastrum(tetraploid) 323.001
CNS0095610Silvery flower (tetraploid) 10.929
CNS0095611Silvery flower (tetraploid) 23.087
CNS0095612Silvery flower (tetraploid) 31.903
CNS0095613Golden flower (tetraploid) 11.741
CNS0095614Golden flower (tetraploid) 21.071
CNS0095615Golden flower (tetraploid) 33.876
CRA001975CRR073297Stem 148.681
CRR073298Stem 236.757
CRR073299Stem 365.889
CRR073300Leaf 19.391
CRR073301Leaf 210.069
CRR073302Leaf 38.156
CRR073303Juvenile bud 14.208
CRR073304Juvenile bud 24.172
CRR073305Juvenile bud 36.759
CRR073306Third green 12.243
CRR073307Third green 25.901
CRR073308Third green 32.984
CRR073309Second white 10.208
CRR073310Second white 20.375
CRR073311Second white 30.224
CRR073312Silver flowering 10.698
CRR073313Silver flowering 20.510
CRR073314Silver flowering 30.230
CRR073315Gold flowering 10.839
CRR073316Gold flowering 20.578
CRR073317Gold flowering 31.448
CRR073318Tawny withering 10.471
CRR073319Tawny withering 20.648
CRR073320Tawny withering 30.000