Detail information of GWHGAAZE002772


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007021138.16.3488E-176Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
COGYP_001658758.11E-15WD repeat-containing protein
Swissprottr|Q8W1K8|MUT11_CHLRE3E-10Protein Mut11
trEMBLtr|A0A061F736|A0A061F736_THECC2E-176Transducin/WD40 repeat-like superfamily protein isoform 2 {ECO:0000313|EMBL:EOY12663.1}
TAIR10AT5G54520.18E-114Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8603161786033416-
GWHAAZE00000001mRNA8603161786033416-
GWHAAZE00000001exon8603161786031988-
GWHAAZE00000001exon8603272686033217-
GWHAAZE00000001exon8603341186033416-
GWHAAZE00000001CDS8603341186033416-
GWHAAZE00000001CDS8603272686033217-
GWHAAZE00000001CDS8603161786031988-
Transcript Sequence

Network for GWHGAAZE002772

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD40821070.067
PF00400.33WD402112460.064
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.670
SRR3591706second leaf4.651
SRR3591707mature leaf8.421
SRR3591708Shoot apex6.205
SRR3591709Stem9.463
SRR3591710White floral bud7.686
SRR3591711White flower11.499
SRR3591712Green floral bud8.115
SRR3591713Yellow flower8.221
SRP173429 SRR8316895Juvenile bud stage 5.975
SRR8316896Juvenile bud stage 8.604
SRR8316897Juvenile bud stage 3.749
SRR8316894Third green stage 2.926
SRR8316900Third green stage 7.354
SRR8316901Third green stage 7.581
SRR8316898Complete white stage 2.797
SRR8316899Complete white stage 7.485
SRR8316903Complete white stage 6.608
SRR8316902Silver flowering stage4.028
SRR8316904Silver flowering stage6.211
SRR8316905Silver flowering stage2.732
SRR8316906Gold flowering stage 8.646
SRR8316907Gold flowering stage 8.430
SRR8316908Gold flowering stage 10.895
SRP132670SRR6706286Control4.068
SRR6706287Light intensity 50%5.788
SRR6706288Light intensity 20%5.246
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.447
CNS0095593Slightly white alabastrum(diploid) 27.976
CNS0095594Slightly white alabastrum(diploid) 36.990
CNS0095595Whole white alabastrum(diploid) 27.703
CNS0095596Whole white alabastrum(diploid) 37.159
CNS0095597Whole white alabastrum(diploid) 47.629
CNS0095598Silvery flower (diploied) 16.380
CNS0095599Silvery flower (diploied) 27.183
CNS0095600Silvery flower (diploied) 310.951
CNS0095601Golden flower (diploid) 17.698
CNS0095602Golden flower (diploid) 210.716
CNS0095603Golden flower (diploid) 310.290
CNS0095604Slightly white alabastrum(tetraploid) 16.421
CNS0095605Slightly white alabastrum(tetraploid) 25.013
CNS0095606Slightly white alabastrum(tetraploid) 39.327
CNS0095607Whole white alabastrum(tetraploid) 15.481
CNS0095608Whole white alabastrum(tetraploid) 23.480
CNS0095609Whole white alabastrum(tetraploid) 36.105
CNS0095610Silvery flower (tetraploid) 19.831
CNS0095611Silvery flower (tetraploid) 215.569
CNS0095612Silvery flower (tetraploid) 315.847
CNS0095613Golden flower (tetraploid) 19.873
CNS0095614Golden flower (tetraploid) 29.160
CNS0095615Golden flower (tetraploid) 312.417
CRA001975CRR073297Stem 110.446
CRR073298Stem 28.049
CRR073299Stem 39.944
CRR073300Leaf 18.157
CRR073301Leaf 26.873
CRR073302Leaf 34.859
CRR073303Juvenile bud 15.938
CRR073304Juvenile bud 27.683
CRR073305Juvenile bud 38.786
CRR073306Third green 15.577
CRR073307Third green 26.483
CRR073308Third green 37.131
CRR073309Second white 112.640
CRR073310Second white 29.411
CRR073311Second white 310.483
CRR073312Silver flowering 110.295
CRR073313Silver flowering 26.487
CRR073314Silver flowering 36.245
CRR073315Gold flowering 16.221
CRR073316Gold flowering 210.681
CRR073317Gold flowering 37.006
CRR073318Tawny withering 18.554
CRR073319Tawny withering 28.261
CRR073320Tawny withering 36.205