Detail information of GWHGAAZE002781


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007021111.13.22884E-90GRAS family transcription factor isoform 2 [Theobroma cacao]
Swissprottr|Q69VG1|CIGR1_ORYSJ1E-80Chitin-inducible gibberellin-responsive protein 1
trEMBLtr|A0A061F6I6|A0A061F6I6_THECC1E-90GRAS family transcription factor isoform 2 {ECO:0000313|EMBL:EOY12636.1}
TAIR10AT1G50600.13E-59scarecrow-like 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8614062886141173-
GWHAAZE00000001mRNA8614062886141173-
GWHAAZE00000001exon8614067386141173-
GWHAAZE00000001exon8614062886140650-
GWHAAZE00000001five_prime_UTR8614111286141173-
GWHAAZE00000001CDS8614067786141111-
GWHAAZE00000001three_prime_UTR8614067386140676-
GWHAAZE00000001three_prime_UTR8614062886140650-
Transcript Sequence

Network for GWHGAAZE002781

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS11432.10E-52
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE002781.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3024681012141618202224Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.668
SRR3591706second leaf3.260
SRR3591707mature leaf2.030
SRR3591708Shoot apex4.763
SRR3591709Stem21.700
SRR3591710White floral bud14.105
SRR3591711White flower9.997
SRR3591712Green floral bud9.159
SRR3591713Yellow flower10.772
SRP173429 SRR8316895Juvenile bud stage 4.778
SRR8316896Juvenile bud stage 4.991
SRR8316897Juvenile bud stage 2.678
SRR8316894Third green stage 2.747
SRR8316900Third green stage 6.148
SRR8316901Third green stage 8.809
SRR8316898Complete white stage 2.964
SRR8316899Complete white stage 15.153
SRR8316903Complete white stage 5.942
SRR8316902Silver flowering stage2.207
SRR8316904Silver flowering stage2.638
SRR8316905Silver flowering stage1.021
SRR8316906Gold flowering stage 4.055
SRR8316907Gold flowering stage 3.127
SRR8316908Gold flowering stage 2.040
SRP132670SRR6706286Control6.064
SRR6706287Light intensity 50%6.876
SRR6706288Light intensity 20%6.470
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.947
CNS0095593Slightly white alabastrum(diploid) 29.870
CNS0095594Slightly white alabastrum(diploid) 37.699
CNS0095595Whole white alabastrum(diploid) 28.984
CNS0095596Whole white alabastrum(diploid) 35.122
CNS0095597Whole white alabastrum(diploid) 47.095
CNS0095598Silvery flower (diploied) 16.303
CNS0095599Silvery flower (diploied) 28.284
CNS0095600Silvery flower (diploied) 37.667
CNS0095601Golden flower (diploid) 18.794
CNS0095602Golden flower (diploid) 210.358
CNS0095603Golden flower (diploid) 39.157
CNS0095604Slightly white alabastrum(tetraploid) 13.261
CNS0095605Slightly white alabastrum(tetraploid) 23.451
CNS0095606Slightly white alabastrum(tetraploid) 36.839
CNS0095607Whole white alabastrum(tetraploid) 13.941
CNS0095608Whole white alabastrum(tetraploid) 22.675
CNS0095609Whole white alabastrum(tetraploid) 35.489
CNS0095610Silvery flower (tetraploid) 16.791
CNS0095611Silvery flower (tetraploid) 27.445
CNS0095612Silvery flower (tetraploid) 34.424
CNS0095613Golden flower (tetraploid) 15.814
CNS0095614Golden flower (tetraploid) 27.701
CNS0095615Golden flower (tetraploid) 33.699
CRA001975CRR073297Stem 16.588
CRR073298Stem 25.682
CRR073299Stem 35.293
CRR073300Leaf 19.897
CRR073301Leaf 28.129
CRR073302Leaf 36.088
CRR073303Juvenile bud 18.392
CRR073304Juvenile bud 211.515
CRR073305Juvenile bud 312.664
CRR073306Third green 12.315
CRR073307Third green 22.780
CRR073308Third green 34.397
CRR073309Second white 12.518
CRR073310Second white 22.344
CRR073311Second white 31.286
CRR073312Silver flowering 12.574
CRR073313Silver flowering 23.107
CRR073314Silver flowering 32.705
CRR073315Gold flowering 11.996
CRR073316Gold flowering 20.918
CRR073317Gold flowering 31.401
CRR073318Tawny withering 112.039
CRR073319Tawny withering 217.760
CRR073320Tawny withering 314.871