Gene detail

Detail information of GWHGAAZE002783

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009597415.1	2.98111E-89	PREDICTED: 50S ribosomal protein L24, chloroplastic-like [Nicotiana tomentosiformis]
COG	YP_007073409.1	3E-40	50S ribosomal protein L24
Swissprot	tr\|Q02764\|RK24_TOBAC	2E-85	50S ribosomal protein L24, chloroplastic (Precursor)
trEMBL	tr\|M1CC96\|M1CC96_SOLTU	6E-85	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400064381}
TAIR10	AT5G54600.1	5E-49	Translation protein SH3-like family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	86182787	86184397	+
GWHAAZE00000001	mRNA	86182787	86184397	+
GWHAAZE00000001	exon	86182787	86182825	+
GWHAAZE00000001	exon	86182964	86183194	+
GWHAAZE00000001	exon	86183966	86184397	+
GWHAAZE00000001	CDS	86182787	86182825	+
GWHAAZE00000001	CDS	86182964	86183194	+
GWHAAZE00000001	CDS	86183966	86184172	+
GWHAAZE00000001	three_prime_UTR	86184173	86184397	+

Transcript Sequence
>GWHTAAZE002787 GTCAAATCAATAGAAAAGCCAGGTCCTATTGTTGTGAAGCTAAAGCGATGGGAGCGGATAAAGTGCAAGCCAAACAGTCTCCCTGTGCTACACAAAATGCACGTTAAGCTAGGTGACACGGTGAAAGTTATATCCGGACATGAGAAGGGCAAGATTGGTGAGATAACAAAGATTATTAAGCATAGCAGCAAAGTGGTGGTTAAAGAAATTAACTTGAAGACCAAGCATGTGAAGTCCAAGGAACAGGGTGAACCGGGGCAGATAATCAAGATTGAAGCACCTATTCACAGCTCAAATGTGATGCTCTATTCAAAAGAAAAGAATGTGGCAAGCCGGGTGGGTCACAAAACCCTCAACAATGGAAAACGTGTACGTTACCTCATAAAAACGGGGGAAATTATTGACAGTGCAGAGGAATGGAAGAGAGTTATTAAGGAAAGACAAAAGACAGAAGAAACTGCTATCGCCACTACTTAAGAGCCCAAGTCCCCTAATGGATTATTATGTAAAACTCTTACAAATTTGTTTCTCTTTCCCATCTCTATGTTTTCTTTTAGTCTTGTTTTTCCCCTTTTGTTCATTGGTATTTCCCAAAGGAGAGAGTTGATGTGTTTTTCCTTTTGACTCTGTGCTGAATGTAGGTCAACCTGTAATTGGATTATTGTAATGTTATATAATTGAAGCATGTGAATTCTCCTGTCA

Network for GWHGAAZE002783

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00467.30	KOW	38	68	6.80E-08
PF17136.5	ribosomal_L24	70	134	8.10E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02895	RP-L24, MRPL24, rplX	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	114.082
	SRR3591706	second leaf	242.610
	SRR3591707	mature leaf	151.321
	SRR3591708	Shoot apex	203.942
	SRR3591709	Stem	45.542
	SRR3591710	White floral bud	37.992
	SRR3591711	White flower	39.803
	SRR3591712	Green floral bud	56.286
	SRR3591713	Yellow flower	43.504
SRP173429	SRR8316895	Juvenile bud stage	58.616
	SRR8316896	Juvenile bud stage	69.986
	SRR8316897	Juvenile bud stage	41.111
	SRR8316894	Third green stage	28.993
	SRR8316900	Third green stage	106.672
	SRR8316901	Third green stage	93.137
	SRR8316898	Complete white stage	22.054
	SRR8316899	Complete white stage	75.897
	SRR8316903	Complete white stage	35.285
	SRR8316902	Silver flowering stage	18.409
	SRR8316904	Silver flowering stage	22.891
	SRR8316905	Silver flowering stage	11.026
	SRR8316906	Gold flowering stage	31.471
	SRR8316907	Gold flowering stage	29.679
	SRR8316908	Gold flowering stage	33.453
SRP132670	SRR6706286	Control	66.117
	SRR6706287	Light intensity 50%	64.742
	SRR6706288	Light intensity 20%	73.191
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	66.435
	CNS0095593	Slightly white alabastrum(diploid) 2	71.093
	CNS0095594	Slightly white alabastrum(diploid) 3	53.100
	CNS0095595	Whole white alabastrum(diploid) 2	58.709
	CNS0095596	Whole white alabastrum(diploid) 3	63.994
	CNS0095597	Whole white alabastrum(diploid) 4	60.246
	CNS0095598	Silvery flower (diploied) 1	87.113
	CNS0095599	Silvery flower (diploied) 2	74.890
	CNS0095600	Silvery flower (diploied) 3	65.257
	CNS0095601	Golden flower (diploid) 1	68.520
	CNS0095602	Golden flower (diploid) 2	65.119
	CNS0095603	Golden flower (diploid) 3	63.819
	CNS0095604	Slightly white alabastrum(tetraploid) 1	67.490
	CNS0095605	Slightly white alabastrum(tetraploid) 2	71.257
	CNS0095606	Slightly white alabastrum(tetraploid) 3	107.526
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.146
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.848
	CNS0095609	Whole white alabastrum(tetraploid) 3	94.167
	CNS0095610	Silvery flower (tetraploid) 1	65.691
	CNS0095611	Silvery flower (tetraploid) 2	70.798
	CNS0095612	Silvery flower (tetraploid) 3	53.819
	CNS0095613	Golden flower (tetraploid) 1	67.790
	CNS0095614	Golden flower (tetraploid) 2	70.503
	CNS0095615	Golden flower (tetraploid) 3	54.706
CRA001975	CRR073297	Stem 1	75.864
	CRR073298	Stem 2	75.239
	CRR073299	Stem 3	91.278
	CRR073300	Leaf 1	57.617
	CRR073301	Leaf 2	50.114
	CRR073302	Leaf 3	70.856
	CRR073303	Juvenile bud 1	68.647
	CRR073304	Juvenile bud 2	66.465
	CRR073305	Juvenile bud 3	60.066
	CRR073306	Third green 1	22.400
	CRR073307	Third green 2	20.732
	CRR073308	Third green 3	20.700
	CRR073309	Second white 1	34.922
	CRR073310	Second white 2	22.738
	CRR073311	Second white 3	14.558
	CRR073312	Silver flowering 1	17.466
	CRR073313	Silver flowering 2	24.452
	CRR073314	Silver flowering 3	12.145
	CRR073315	Gold flowering 1	178.643
	CRR073316	Gold flowering 2	196.194
	CRR073317	Gold flowering 3	176.658
	CRR073318	Tawny withering 1	36.816
	CRR073319	Tawny withering 2	49.909
	CRR073320	Tawny withering 3	39.827