Detail information of GWHGAAZE002785


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010267823.10PREDICTED: uncharacterized protein LOC104604941 [Nelumbo nucifera]
trEMBLtr|U5GX07|U5GX07_POPTR0Uncharacterized protein {ECO:0000313|EMBL:ERP67169.1}
TAIR10AT5G54630.12E-140zinc finger protein-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8619913186200926-
GWHAAZE00000001mRNA8619913186200926-
GWHAAZE00000001exon8619913186199792-
GWHAAZE00000001exon8620027586200926-
GWHAAZE00000001CDS8620027586200926-
GWHAAZE00000001CDS8619913186199792-
Transcript Sequence

Network for GWHGAAZE002785

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.700
SRR3591706second leaf9.201
SRR3591707mature leaf6.279
SRR3591708Shoot apex16.209
SRR3591709Stem0.395
SRR3591710White floral bud1.514
SRR3591711White flower1.333
SRR3591712Green floral bud5.938
SRR3591713Yellow flower0.109
SRP173429 SRR8316895Juvenile bud stage 7.010
SRR8316896Juvenile bud stage 6.201
SRR8316897Juvenile bud stage 3.184
SRR8316894Third green stage 4.450
SRR8316900Third green stage 6.667
SRR8316901Third green stage 6.149
SRR8316898Complete white stage 0.065
SRR8316899Complete white stage 5.001
SRR8316903Complete white stage 1.037
SRR8316902Silver flowering stage0.133
SRR8316904Silver flowering stage0.245
SRR8316905Silver flowering stage0.052
SRR8316906Gold flowering stage 0.649
SRR8316907Gold flowering stage 0.120
SRR8316908Gold flowering stage 0.294
SRP132670SRR6706286Control6.606
SRR6706287Light intensity 50%7.232
SRR6706288Light intensity 20%7.717
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.572
CNS0095593Slightly white alabastrum(diploid) 26.526
CNS0095594Slightly white alabastrum(diploid) 34.289
CNS0095595Whole white alabastrum(diploid) 23.235
CNS0095596Whole white alabastrum(diploid) 33.763
CNS0095597Whole white alabastrum(diploid) 41.625
CNS0095598Silvery flower (diploied) 17.202
CNS0095599Silvery flower (diploied) 22.071
CNS0095600Silvery flower (diploied) 31.146
CNS0095601Golden flower (diploid) 12.582
CNS0095602Golden flower (diploid) 22.568
CNS0095603Golden flower (diploid) 32.123
CNS0095604Slightly white alabastrum(tetraploid) 16.462
CNS0095605Slightly white alabastrum(tetraploid) 25.124
CNS0095606Slightly white alabastrum(tetraploid) 316.295
CNS0095607Whole white alabastrum(tetraploid) 12.382
CNS0095608Whole white alabastrum(tetraploid) 21.552
CNS0095609Whole white alabastrum(tetraploid) 34.528
CNS0095610Silvery flower (tetraploid) 10.118
CNS0095611Silvery flower (tetraploid) 20.766
CNS0095612Silvery flower (tetraploid) 30.350
CNS0095613Golden flower (tetraploid) 10.002
CNS0095614Golden flower (tetraploid) 20.044
CNS0095615Golden flower (tetraploid) 30.053
CRA001975CRR073297Stem 126.395
CRR073298Stem 223.193
CRR073299Stem 321.463
CRR073300Leaf 111.908
CRR073301Leaf 216.665
CRR073302Leaf 312.940
CRR073303Juvenile bud 15.134
CRR073304Juvenile bud 22.907
CRR073305Juvenile bud 39.354
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.085
CRR073310Second white 20.012
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.055
CRR073314Silver flowering 30.000
CRR073315Gold flowering 18.717
CRR073316Gold flowering 210.662
CRR073317Gold flowering 35.469
CRR073318Tawny withering 10.312
CRR073319Tawny withering 20.514
CRR073320Tawny withering 30.527