Detail information of GWHGAAZE002787


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006413100.11.79042E-77hypothetical protein EUTSA_v10026555mg [Eutrema salsugineum]
Swissprottr|O81826|H2A3_ARATH8E-79Probable histone H2A.3
trEMBLtr|V4MNN4|V4MNN4_EUTSA7E-78Histone H2A {ECO:0000256|RuleBase:RU003556}
TAIR10AT3G20670.12E-41histone H2A 13

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8621791386218708-
GWHAAZE00000001mRNA8621791386218708-
GWHAAZE00000001exon8621852086218708-
GWHAAZE00000001exon8621791386218294-
GWHAAZE00000001CDS8621852086218708-
GWHAAZE00000001CDS8621808586218294-
GWHAAZE00000001three_prime_UTR8621791386218084-
Transcript Sequence

Network for GWHGAAZE002787

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.25Histone12903.60E-14
PF16211.6Histone_H2A_C931267.80E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0046982molecular_functionprotein heterodimerization activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf211.450
SRR3591706second leaf167.077
SRR3591707mature leaf186.188
SRR3591708Shoot apex659.973
SRR3591709Stem175.917
SRR3591710White floral bud500.703
SRR3591711White flower277.772
SRR3591712Green floral bud466.630
SRR3591713Yellow flower235.878
SRP173429 SRR8316895Juvenile bud stage 146.220
SRR8316896Juvenile bud stage 166.878
SRR8316897Juvenile bud stage 74.945
SRR8316894Third green stage 74.301
SRR8316900Third green stage 269.379
SRR8316901Third green stage 267.144
SRR8316898Complete white stage 128.042
SRR8316899Complete white stage 244.140
SRR8316903Complete white stage 200.821
SRR8316902Silver flowering stage79.552
SRR8316904Silver flowering stage86.511
SRR8316905Silver flowering stage50.833
SRR8316906Gold flowering stage 135.241
SRR8316907Gold flowering stage 153.187
SRR8316908Gold flowering stage 146.908
SRP132670SRR6706286Control193.307
SRR6706287Light intensity 50%194.860
SRR6706288Light intensity 20%222.336
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1237.579
CNS0095593Slightly white alabastrum(diploid) 2275.117
CNS0095594Slightly white alabastrum(diploid) 3219.787
CNS0095595Whole white alabastrum(diploid) 2224.369
CNS0095596Whole white alabastrum(diploid) 3265.319
CNS0095597Whole white alabastrum(diploid) 4191.878
CNS0095598Silvery flower (diploied) 1185.777
CNS0095599Silvery flower (diploied) 2162.880
CNS0095600Silvery flower (diploied) 3190.964
CNS0095601Golden flower (diploid) 1132.068
CNS0095602Golden flower (diploid) 2153.992
CNS0095603Golden flower (diploid) 3168.314
CNS0095604Slightly white alabastrum(tetraploid) 1256.121
CNS0095605Slightly white alabastrum(tetraploid) 2252.454
CNS0095606Slightly white alabastrum(tetraploid) 3361.171
CNS0095607Whole white alabastrum(tetraploid) 1147.677
CNS0095608Whole white alabastrum(tetraploid) 2161.845
CNS0095609Whole white alabastrum(tetraploid) 3254.316
CNS0095610Silvery flower (tetraploid) 1191.425
CNS0095611Silvery flower (tetraploid) 2188.011
CNS0095612Silvery flower (tetraploid) 3274.874
CNS0095613Golden flower (tetraploid) 1217.742
CNS0095614Golden flower (tetraploid) 2191.920
CNS0095615Golden flower (tetraploid) 3237.913
CRA001975CRR073297Stem 1179.680
CRR073298Stem 2184.405
CRR073299Stem 3288.735
CRR073300Leaf 1145.413
CRR073301Leaf 2164.012
CRR073302Leaf 3207.854
CRR073303Juvenile bud 1151.582
CRR073304Juvenile bud 2172.808
CRR073305Juvenile bud 3159.943
CRR073306Third green 1156.458
CRR073307Third green 2169.218
CRR073308Third green 3158.665
CRR073309Second white 1158.167
CRR073310Second white 2111.185
CRR073311Second white 386.827
CRR073312Silver flowering 1138.012
CRR073313Silver flowering 2135.147
CRR073314Silver flowering 383.731
CRR073315Gold flowering 1150.704
CRR073316Gold flowering 2141.648
CRR073317Gold flowering 3161.877
CRR073318Tawny withering 1210.126
CRR073319Tawny withering 2180.218
CRR073320Tawny withering 3203.767