Gene detail

Detail information of GWHGAAZE002813

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010644832.1	5.8023E-117	PREDICTED: F-box/LRR-repeat protein At4g14103-like [Vitis vinifera]
Swissprot	tr\|Q9FM89\|FDL38_ARATH	3E-58	F-box/FBD/LRR-repeat protein At5g56420
trEMBL	tr\|A5BLF6\|A5BLF6_VITVI	5E-117	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN74740.1}
TAIR10	AT5G56420.2	9E-50	F-box/RNI-like/FBD-like domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	86814435	86816208	+
GWHAAZE00000001	mRNA	86814435	86816208	+
GWHAAZE00000001	exon	86814435	86815355	+
GWHAAZE00000001	exon	86815719	86815859	+
GWHAAZE00000001	exon	86815936	86816208	+
GWHAAZE00000001	CDS	86814435	86815355	+
GWHAAZE00000001	CDS	86815719	86815859	+
GWHAAZE00000001	CDS	86815936	86816208	+

Transcript Sequence
>GWHTAAZE002817 ATGGATTCAGGCATTGGGAGGAGTATGGATAGGATCAGCAACTTACCTGATTCCATATTGTGTCACATTCTTTCCTTTCTCCCTACAAAATACGCGGTGGGAACCAGCATCCTATCGGCAAGATGGAGATACCTTTGGGCTTCCCTCCCAAATCTCGACTTTGATGACACTTTATACTTTGATAGGAGCAAAGCAAGAGGTTATACAAGAATTGATGTTGATCCGACCTTTATGAATTTTGTGGATAGAGTATTGCTTCTCAGCGATGCACCGTGTCTTCAAAGTTTCCGTTTTGTGCGTTATGCCGTTGATGATTTTTCCCTTGTTGATACGTGGATCTGTGCTGCAATTAAGCGCAATGTTCAAAAGCTGGAGCTTCGATATGTTATTGATGTCCCTGTTAAGCTGCCTAGTATACTCTTCACCTGCAAAACCCTGGTGGTTTTAATACTCGAAAGGGGGATTTTCCTAGAACCACCTCCTTCAGTTTGGCTTCCTAGTCTCAAGATTCTTCATCTAGAGACCCTTGAATATGGAAATGAAGAGTCAGCGCGGAAGCTTTATGCCGGATGCCCCATTCTTGAAGAATTGTTTATAGAAAGATATCTTTTTGATACTCGAAGAGTTATAGATGTTTCTGTGCCTACATTAAAACGCTTGAAGATAGAATTTACACATGATGGTGAAAGCTCAGACCATTCAGATGATGAGCACGCTAATCAAGAGGTAGGGTACACGCTTGTGATCAATTGCCCAAAACTTAAACACCTCGATCTCGAAGATTATGTGTCGACGGACTTCTGCGTTGAAAACCTATCGTCCTTGTCGAGTGCCCGTCTTTATGCTGGTGGTTGCATATACAAGATTCTTATTGGCATCACAAGTGTTAAGTTTCTAGAGTTATCTGATTCGGCCTTGTTTTTTTTTAGTACTGATTGTGCACTCCCTACATTCCTCAATTTGACCCGTCTAGAGCTTGATGCGATCGGTGACACCGGTTGGAATCTGTTGACCGAATTTCTTGAATGTTCTCCTAATCTTGAAGTCCTTATTCTTCGAAAGGCACAAAGTTTCAGAGATACAGGCAAATGTTGGACACCACCACGCCGACCACCTAATTGTTTGTTACATCTCAAAGAAATCGAAATGAGGAAATTCAATGGGAAAGAACATCAGCTTGAAGCAATAGAGTATTTGCTGCAAAATGCTAAAGTTCTAAAGAAGATGACAATTGATTGTAGATCTTCAAATATGAAAGAGGAATTTGGGGGCTTTAAGAGATTAGTAGCGTTTCCAAAGAGCTCACGTAATTGCCAACTTGATCTCCGGTTTTGA

Network for GWHGAAZE002813

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	11	49	6.40E-06
PF08387.11	FBD	369	411	1.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.452
	SRR3591706	second leaf	9.026
	SRR3591707	mature leaf	5.651
	SRR3591708	Shoot apex	11.806
	SRR3591709	Stem	7.879
	SRR3591710	White floral bud	5.717
	SRR3591711	White flower	5.594
	SRR3591712	Green floral bud	12.981
	SRR3591713	Yellow flower	2.401
SRP173429	SRR8316895	Juvenile bud stage	7.187
	SRR8316896	Juvenile bud stage	10.700
	SRR8316897	Juvenile bud stage	7.398
	SRR8316894	Third green stage	5.293
	SRR8316900	Third green stage	13.270
	SRR8316901	Third green stage	10.865
	SRR8316898	Complete white stage	2.991
	SRR8316899	Complete white stage	12.380
	SRR8316903	Complete white stage	5.457
	SRR8316902	Silver flowering stage	3.250
	SRR8316904	Silver flowering stage	5.760
	SRR8316905	Silver flowering stage	2.848
	SRR8316906	Gold flowering stage	7.489
	SRR8316907	Gold flowering stage	6.045
	SRR8316908	Gold flowering stage	5.618
SRP132670	SRR6706286	Control	8.880
	SRR6706287	Light intensity 50%	10.507
	SRR6706288	Light intensity 20%	10.632
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.005
	CNS0095593	Slightly white alabastrum(diploid) 2	8.027
	CNS0095594	Slightly white alabastrum(diploid) 3	8.114
	CNS0095595	Whole white alabastrum(diploid) 2	12.284
	CNS0095596	Whole white alabastrum(diploid) 3	9.954
	CNS0095597	Whole white alabastrum(diploid) 4	9.992
	CNS0095598	Silvery flower (diploied) 1	11.295
	CNS0095599	Silvery flower (diploied) 2	7.703
	CNS0095600	Silvery flower (diploied) 3	9.111
	CNS0095601	Golden flower (diploid) 1	9.091
	CNS0095602	Golden flower (diploid) 2	8.715
	CNS0095603	Golden flower (diploid) 3	8.250
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.270
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.676
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.281
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.647
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.020
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.559
	CNS0095610	Silvery flower (tetraploid) 1	5.136
	CNS0095611	Silvery flower (tetraploid) 2	7.074
	CNS0095612	Silvery flower (tetraploid) 3	3.217
	CNS0095613	Golden flower (tetraploid) 1	3.401
	CNS0095614	Golden flower (tetraploid) 2	5.104
	CNS0095615	Golden flower (tetraploid) 3	3.671
CRA001975	CRR073297	Stem 1	12.702
	CRR073298	Stem 2	12.629
	CRR073299	Stem 3	8.721
	CRR073300	Leaf 1	10.738
	CRR073301	Leaf 2	8.787
	CRR073302	Leaf 3	7.428
	CRR073303	Juvenile bud 1	5.576
	CRR073304	Juvenile bud 2	3.674
	CRR073305	Juvenile bud 3	5.324
	CRR073306	Third green 1	1.066
	CRR073307	Third green 2	0.546
	CRR073308	Third green 3	1.244
	CRR073309	Second white 1	1.357
	CRR073310	Second white 2	0.833
	CRR073311	Second white 3	1.882
	CRR073312	Silver flowering 1	0.780
	CRR073313	Silver flowering 2	0.601
	CRR073314	Silver flowering 3	1.160
	CRR073315	Gold flowering 1	7.005
	CRR073316	Gold flowering 2	8.038
	CRR073317	Gold flowering 3	3.566
	CRR073318	Tawny withering 1	7.676
	CRR073319	Tawny withering 2	5.014
	CRR073320	Tawny withering 3	10.028