Gene detail

Detail information of GWHGAAZE002816

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011083180.1	1.65781E-56	PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Sesamum indicum]
Swissprot	tr\|Q9LXR4\|FBL56_ARATH	4E-47	Putative F-box/LRR-repeat protein At3g58880
trEMBL	tr\|A0A068US43\|A0A068US43_COFCA	9E-56	Coffea canephora DH200=94 genomic scaffold, scaffold_54 {ECO:0000313\|EMBL:CDP11355.1}
TAIR10	AT3G58880.1	1E-42	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	86839627	86841801	+
GWHAAZE00000001	mRNA	86839627	86841801	+
GWHAAZE00000001	exon	86839627	86840616	+
GWHAAZE00000001	exon	86841285	86841428	+
GWHAAZE00000001	exon	86841514	86841801	+
GWHAAZE00000001	CDS	86839627	86840616	+
GWHAAZE00000001	CDS	86841285	86841428	+
GWHAAZE00000001	CDS	86841514	86841801	+

Transcript Sequence
>GWHTAAZE002820 ATGGATCCGATCCCAAAACGCCACTGCTCTGAACCCTCAATTGAAGCCAACAATAACAGCGAAGATCTCATCAGCAGTTTGCCAGATTGTGTTCTCTCTCACATCCTATCTAAACTCCCAACGAAATACGCAGTTGCAACCACAATTCTCTCCACCAGATGGAAAGACCTCTTCGCTGCAATTCCCGAACCTAGTCTCGAATTCGATGATTCCTTAATCTTAAACCCCGGAAACAACGATGACGATGACGAATCGAACGTAGAGTACCGAATTGCCAGTTTTGCTAAATTCACTTACAGAGTCCTAAACGTGATTTTTGAAGAGGTAGGGTTTGTTTCTCGATTTACTCTCAAGTTAAGTGAAGAATATCAGGATGGACAAATTCTCGATTGGATTTATGCTGCTTTACAACATGCTGTACCAGTTATTGACCTAGATATTTGCATGGATTATCCTGATCTCTTTTTTGAACTCATTAATGGTTGGACTTGCCTTAGATTTATAACATTGCGTAATTATATAGGTATTTATATCCCCGATTCGTTTACTTTACCCAATCTCGAATACCTTGTTCTCGATGGCATTCAATTTTACACCAACGACGAGATTTCCCTGCTTTTATCCGGCTGCCCTGTGCTCCAACGTTTGACCATGAGTTATCTTCGCCTCGAAGAAGTTGATACTGTTAACATATCCGTTCCTTCGCTTAAGCATTTGACAATTGAGTACTGCTGGTACACTGGTGAAGAGGAACATTATAAAGTCGTGTTGGATACCCCCGCGCTTGAGTCATTGTATTACGAAGATTACATGCCAGACGAACTTGTTTTGAAGAATCTCAATTCTAATATTAGGGCTGCTCACGTAAGTGTTCTGCTGGTTGAGGAACTATCGGAAGCCGATAGCTTTCAATATCATAAAGATGTAGCTGCACTTATTAGAGCATGTTCTAGTGTTAGGACTCTATTCTTATCAAAGGATACCGTATCGGCCTTTCAAAAATCTAGCGAGCCAGTTCCTAAGTTTTGTAATTTGACCGGTTTGCAGCTCGGTGGTTTTGATACAAATGGATGGGAATTGTTACCACAGTTACTCGATAATGCGCCTAAACTTGAAATCCTTAGTATTGCAAAGGAGTTTTTTGAAGAAAAAGGATGTTTTGACATATTCGACTCTCATCTATCTGATAAAATTGCTCCTTGTCTCTTATCAAATCTTAAGAAGATTGAGATTTTCGAATTCAAAGGGGAATTAGATGAACTGTATCTGATAGAGTACTTCCTATACACCGGGAAAGTTTTGAACGAGTTTGAAATCATTGGTGATATGTCTTGGGATAAGTATGTCATCATTAGAGAAATATTAGCACGTCTACCAAGACTGTCAGATACATGTGAAATTTTCTTTCGCAACTTTAACTAG

Network for GWHGAAZE002816

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	23	58	8.70E-07
PF07723.14	LRR_2	187	211	1.2
PF08387.11	FBD	400	437	3.00E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.165
	SRR3591706	second leaf	1.655
	SRR3591707	mature leaf	2.665
	SRR3591708	Shoot apex	4.015
	SRR3591709	Stem	4.170
	SRR3591710	White floral bud	5.759
	SRR3591711	White flower	7.683
	SRR3591712	Green floral bud	5.670
	SRR3591713	Yellow flower	7.201
SRP173429	SRR8316895	Juvenile bud stage	4.365
	SRR8316896	Juvenile bud stage	11.165
	SRR8316897	Juvenile bud stage	2.904
	SRR8316894	Third green stage	4.362
	SRR8316900	Third green stage	10.551
	SRR8316901	Third green stage	10.836
	SRR8316898	Complete white stage	5.955
	SRR8316899	Complete white stage	11.075
	SRR8316903	Complete white stage	10.488
	SRR8316902	Silver flowering stage	5.229
	SRR8316904	Silver flowering stage	8.283
	SRR8316905	Silver flowering stage	2.794
	SRR8316906	Gold flowering stage	7.549
	SRR8316907	Gold flowering stage	9.250
	SRR8316908	Gold flowering stage	5.656
SRP132670	SRR6706286	Control	6.040
	SRR6706287	Light intensity 50%	5.770
	SRR6706288	Light intensity 20%	5.134
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.197
	CNS0095593	Slightly white alabastrum(diploid) 2	6.650
	CNS0095594	Slightly white alabastrum(diploid) 3	9.807
	CNS0095595	Whole white alabastrum(diploid) 2	5.211
	CNS0095596	Whole white alabastrum(diploid) 3	5.861
	CNS0095597	Whole white alabastrum(diploid) 4	4.395
	CNS0095598	Silvery flower (diploied) 1	4.954
	CNS0095599	Silvery flower (diploied) 2	3.358
	CNS0095600	Silvery flower (diploied) 3	9.741
	CNS0095601	Golden flower (diploid) 1	4.423
	CNS0095602	Golden flower (diploid) 2	9.215
	CNS0095603	Golden flower (diploid) 3	8.751
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.895
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.647
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.032
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.167
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.306
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.981
	CNS0095610	Silvery flower (tetraploid) 1	6.335
	CNS0095611	Silvery flower (tetraploid) 2	7.953
	CNS0095612	Silvery flower (tetraploid) 3	10.226
	CNS0095613	Golden flower (tetraploid) 1	4.647
	CNS0095614	Golden flower (tetraploid) 2	6.568
	CNS0095615	Golden flower (tetraploid) 3	8.864
CRA001975	CRR073297	Stem 1	4.639
	CRR073298	Stem 2	4.671
	CRR073299	Stem 3	3.361
	CRR073300	Leaf 1	5.100
	CRR073301	Leaf 2	3.880
	CRR073302	Leaf 3	3.263
	CRR073303	Juvenile bud 1	4.406
	CRR073304	Juvenile bud 2	4.808
	CRR073305	Juvenile bud 3	3.133
	CRR073306	Third green 1	4.618
	CRR073307	Third green 2	3.015
	CRR073308	Third green 3	4.325
	CRR073309	Second white 1	4.802
	CRR073310	Second white 2	4.255
	CRR073311	Second white 3	3.442
	CRR073312	Silver flowering 1	5.371
	CRR073313	Silver flowering 2	2.418
	CRR073314	Silver flowering 3	3.733
	CRR073315	Gold flowering 1	1.593
	CRR073316	Gold flowering 2	0.965
	CRR073317	Gold flowering 3	1.483
	CRR073318	Tawny withering 1	2.389
	CRR073319	Tawny withering 2	2.805
	CRR073320	Tawny withering 3	1.426