Gene detail

Detail information of GWHGAAZE002818

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601122.1	0	PREDICTED: F-box/LRR-repeat protein At3g59190 isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q94B46\|FBL74_ARATH	1E-45	F-box/LRR-repeat protein At4g14096
trEMBL	tr\|M0ZKH4\|M0ZKH4_SOLTU	5E-173	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400002698}
TAIR10	AT4G14096.1	4E-37	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	86896824	86898392	+
GWHAAZE00000001	mRNA	86896824	86898392	+
GWHAAZE00000001	exon	86896824	86897771	+
GWHAAZE00000001	exon	86897865	86898020	+
GWHAAZE00000001	exon	86898109	86898392	+
GWHAAZE00000001	CDS	86896824	86897771	+
GWHAAZE00000001	CDS	86897865	86898020	+
GWHAAZE00000001	CDS	86898109	86898378	+
GWHAAZE00000001	three_prime_UTR	86898379	86898392	+

Transcript Sequence
>GWHTAAZE002822 ATGGCTGAACACAAACACCAAAAGCTCCACAACGTACAGAAGGCTGATTATACTGAAGACAAAATCAGCAACTTACCCGATTGTATTCTCCATCACATCCTATCTTTCCTTCCCACGAAAGATGCTGTTGGAACTTGCATATTGTCAACGAGATGGAAGTACTTGTGGACCTCTGTCCCCAACATTGACTTCGACGATGAATTGTTATATTCGAGCGGGTTGGATGGTTGGCCACTTGAGGCGGGTTGTTTTATGAATTTTGTTGAAAGGGTGCTTCTACTTCGGGATTCGTCAACCATGAAAAAATTTCGCCTTTCTTGCCGAGTTTGCTTCAGTGCAGCTCGTGTTCATGCTTGGGTCTCTGCTGCTATCATGCATAATGTTCAAGAACTTGATCTTTGCCTCTTTGTGGACAATTCTTTTATATTGCCGCGCTGTATGTTCGATACTAAATCTCTTACAGTATTGAAAATACAATTGACTTGTGTCCTTGAACTCCCAACTTGTATTTCTTTTCCATGCCTAAAAACCCTGCACCTTCGTTTAGTTACATTCCCGGACGATATCTCAACCCAAAAACTTTTCTCTGGCTGCCCCGTCCTTCAAGAATTGGCTATAATAGACTGTGACTGGATGTACTTGAAGAGTATTACAATTTCTATTCCTACATTGACAAGCTTGACGATAGATGATCTTCCGTACTTTGGGGCAAACGATGATCTACATGGTTGTGATATCAATGTTGATGCCGTAAATCTCTTACATCTGAAGTACTTAGGTCATCTATCCAACGAACTTTTTCTTCATAATATATCTTCTCTGGCCAAGGCATGTGTTCATATTCCAATTCGTTTGGAGAGACAAAAAGAAATCGCTTATCGTGCTGCTAAGCTACTTGGTGCACTGCGCAATATTAGTTCCATCAGAATAACGAATCGCACTATTGAGTCGCTCTCTTTTGGAGATAAAGTGCGGGTAAGTTTTCCCTTGTTCAAAAACTTGACACATCTAGAGTTGAGCATGGGAATTGAGAATCACACTGTTTGGCCATTGATGAAGCTGATCCAATGCTCGCCAAATCTAAAATCACTTGATTTTGTTGAGGGACTTGACCTTGGAATGAATCTTGGGGAGGATTATTGGACTTTTATATCAGTACCTGAATGCTTACTGTGCTCCCTCAAGGAAGTCAGTTTCCATCGTTTTTGCGGGTATGATGCAGAAATATGTTTCTTAAAATATTTTCTGAAGAATTCACTTGTTTTGGAGAGGATGAACATCTATAGTTCTAAGAACCTTTTAGGAGATCCAAATAAGCAAATAGATGTCAGGAAATCAGTTACAAGTGTTTGCCAGAGGCTCAGTGGGTTGTGAAATCGGATTCTTTT

Network for GWHGAAZE002818

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	21	59	2.70E-08
PF07723.14	LRR_2	174	199	6.10E-07
PF08387.11	FBD	385	427	7.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.153
	SRR3591706	second leaf	7.237
	SRR3591707	mature leaf	9.162
	SRR3591708	Shoot apex	9.695
	SRR3591709	Stem	11.295
	SRR3591710	White floral bud	9.885
	SRR3591711	White flower	9.640
	SRR3591712	Green floral bud	8.038
	SRR3591713	Yellow flower	8.853
SRP173429	SRR8316895	Juvenile bud stage	8.268
	SRR8316896	Juvenile bud stage	9.236
	SRR8316897	Juvenile bud stage	4.788
	SRR8316894	Third green stage	3.951
	SRR8316900	Third green stage	6.919
	SRR8316901	Third green stage	8.827
	SRR8316898	Complete white stage	3.722
	SRR8316899	Complete white stage	11.749
	SRR8316903	Complete white stage	5.097
	SRR8316902	Silver flowering stage	4.608
	SRR8316904	Silver flowering stage	7.635
	SRR8316905	Silver flowering stage	3.058
	SRR8316906	Gold flowering stage	8.367
	SRR8316907	Gold flowering stage	7.954
	SRR8316908	Gold flowering stage	11.307
SRP132670	SRR6706286	Control	3.174
	SRR6706287	Light intensity 50%	3.347
	SRR6706288	Light intensity 20%	3.316
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.354
	CNS0095593	Slightly white alabastrum(diploid) 2	3.321
	CNS0095594	Slightly white alabastrum(diploid) 3	3.239
	CNS0095595	Whole white alabastrum(diploid) 2	5.532
	CNS0095596	Whole white alabastrum(diploid) 3	4.378
	CNS0095597	Whole white alabastrum(diploid) 4	3.377
	CNS0095598	Silvery flower (diploied) 1	8.009
	CNS0095599	Silvery flower (diploied) 2	6.402
	CNS0095600	Silvery flower (diploied) 3	9.761
	CNS0095601	Golden flower (diploid) 1	6.653
	CNS0095602	Golden flower (diploid) 2	9.703
	CNS0095603	Golden flower (diploid) 3	7.858
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.357
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.169
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.300
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.478
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.699
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.354
	CNS0095610	Silvery flower (tetraploid) 1	7.101
	CNS0095611	Silvery flower (tetraploid) 2	11.877
	CNS0095612	Silvery flower (tetraploid) 3	8.483
	CNS0095613	Golden flower (tetraploid) 1	3.663
	CNS0095614	Golden flower (tetraploid) 2	6.856
	CNS0095615	Golden flower (tetraploid) 3	6.443
CRA001975	CRR073297	Stem 1	5.658
	CRR073298	Stem 2	4.885
	CRR073299	Stem 3	4.697
	CRR073300	Leaf 1	5.289
	CRR073301	Leaf 2	6.570
	CRR073302	Leaf 3	4.902
	CRR073303	Juvenile bud 1	3.949
	CRR073304	Juvenile bud 2	3.146
	CRR073305	Juvenile bud 3	5.873
	CRR073306	Third green 1	2.126
	CRR073307	Third green 2	2.711
	CRR073308	Third green 3	1.952
	CRR073309	Second white 1	2.494
	CRR073310	Second white 2	2.880
	CRR073311	Second white 3	2.421
	CRR073312	Silver flowering 1	2.783
	CRR073313	Silver flowering 2	2.678
	CRR073314	Silver flowering 3	1.200
	CRR073315	Gold flowering 1	2.914
	CRR073316	Gold flowering 2	4.638
	CRR073317	Gold flowering 3	6.191
	CRR073318	Tawny withering 1	4.622
	CRR073319	Tawny withering 2	5.844
	CRR073320	Tawny withering 3	6.968