Gene detail

Detail information of GWHGAAZE002827

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05770.1	0	unnamed protein product [Coffea canephora]
COG	YP_828864.1	3E-22	serine/threonine protein kinase
Swissprot	tr\|Q9FE20\|PBS1_ARATH	1E-158	Serine/threonine-protein kinase PBS1
trEMBL	tr\|A0A068UB51\|A0A068UB51_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP05770.1}
TAIR10	AT3G20530.1	9E-155	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	86983472	86990530	-
GWHAAZE00000001	mRNA	86983472	86990530	-
GWHAAZE00000001	exon	86988631	86990530	-
GWHAAZE00000001	exon	86985670	86985854	-
GWHAAZE00000001	exon	86985299	86985488	-
GWHAAZE00000001	exon	86984593	86984981	-
GWHAAZE00000001	exon	86983472	86983732	-
GWHAAZE00000001	CDS	86988631	86990530	-
GWHAAZE00000001	CDS	86985670	86985854	-
GWHAAZE00000001	CDS	86985299	86985488	-
GWHAAZE00000001	CDS	86984593	86984981	-
GWHAAZE00000001	CDS	86983472	86983732	-

Transcript Sequence
>GWHTAAZE002831 ATGGAAGAGAGAGAGGCGTTAATGGTGGCACCACCCACATCCCCAGGTGCCCACCCAACCCCCAGAATTTCCCATTTCCTTGAACCCACACTCCCCACCTCCATTAATCTTCCTTCTTCACTTTCTCTCTCCTCTTTCACCACCAACAAATACCCATTCAACGTATTCTTCAATGGCTGGAGATACCCACAAAAACACTGGAAGAATTGGGCCGATCGCCTACATTTTCTACACAAATCTACCTGGATTAAAGCCGGAATTAACGACACCGTGATCAACTCAACCTTCACCATCCCTCGAAACGAGGCTCTGCTTCTCGGGTTTGCAGAGAGATGGTGCTCACACACCAATACATTTCTTTTCCCATTCGGTGAATCAACTCTCACCCTTGAAGATATGATGGTTTTAGGTGGTTACTCTGTTTTGGGAGACTCTGTTCTTGAAACTACCCAACTTATTGAAATCGAAGAAAAATTGGAGCAAGCGAGACTTGAATTGTCAAGGACAACTGCTCATAAGGCTGTTCATTATTCGTGGATGGTTAAATTCATGGGCAGTGGAAGCGAAATCGAGCACGAAGCATTTCTCGTCCTCTGGTTGTCTAGGTTTGTCTTCCCTTCATCTTCGCGAGATACTATAAGGAAAAATGTTTTCCCCATTGCGATTCTTCTAGCTAGAGGTACTAAAATTGCTCTTGCTCCAGCTGTTTTATCTACCATTTATAGGGATTTGAGTTTACTCAAAAATGCTATTGTTGATTGTACTACTAAATATGAAGATGACGGCGATGAGGTTTTATCGGTTACTGTTTGGGGTACTTTGCAATTAGTACAGGTTTGGATTTGGGAGAGATTCCCCACCATTGGGCCGAAGCCTAATTTAGTGGAAAATGGTGTGCCTAGACTGGCTCGATGGCATAACTTGAAGCAAGTGATGAGCATTGAAAATGTTAGGTCGGGTTTAGACTCTTCTTCCGATCATTTTCGTTGGCGCCCTTATTCTATCTTTGTAAATAATTGTTTTTCTTGCAAGTTTTATAAGGAAGAAGACGAGTGGGTTTCATTTGATTCTAATAACGAAGACTTAGTTGCGTTTGCTCGATGTTTGAGGGTGTCTGAGCTAGTTGGTTTGGAATGTATTGAGCATTACCTCCCTCATAGAGTTGCTATGCAATTTGGCTTTGATCAAGATCTTCCGGGTCATGTAGACCGAGCCAACAGAACTCCTGAAATTGCTTGGAGAAATTACACTCGTCCGGTTGGAGATAAAATGCTGTATTTTCCATCTCGACTCTTTGAAGCGGATGTTACCACTCGATACTTGGAGTGGTGGAAACATTTGGTGCTTAAAGAAATGAATGATGCAAGTAATAATGCTGCTGAGAATGAGAAACTTAGTTCTATGAGTACAAGAAGAAGTAAGGCACATTGTTCAAAATGTAGGAAGGCAGATAATGATGCCGATGTTCCTCCTGGTTTTCATCCCAAATGCAGTAAGGTCGAAGTGACGAATTCTGTTGATGAAGATAAACTAGCAGTGGCCGAAATTGTGAGGAGAAGGCGGACTGGAAATGGTGAGGCTTCAATGGGTGCTCCATTGCAGAGTCTGGTTTCATATGTTGCTGATGATGAATCTGTCCAAAAAGTGAAGTCATCTGTTTTTAGATGTACAGTCAAGAGTGAACCCATGGTTGAAGAACTGGAGAAAACTGCATTCAATGTAATGGAGAATGGAGGAACAAGTGTTGCTCATAATAGCGTGAGAGGCAATAGCAACGAAGGAGAAAGCAGCATTCTTATTACGGATGAGCAACTAGGAATAGGAGTGCATCTCGAAACTAGGATTAGCAAGCTTGAGAGAAAGGTTGCTAAATTGAAAGCAGCAAAGGCCAAAGTTATTGATAGCGGCAAAAGAAGATACATAACCGAAGAGTTAGCAGCAAAGGCCGGAAAAGGGAATATTACTTCTCAGATTTTCACATTCCAAGAGTTGTCCACTGCAACGCAGAACTTCAATCCGGATTCTTTGATCGGTGAAGGCGGTTTTGGGAGGGTCTACAAAGGCCATCTCGAAAGCAAAAATATTGATGTTGCTGTTAAGCAACTTGACAGAAATGGGTTCCAAGGGAACAGAGAATTCCTTGTGGAGGTGCTGATGTTGAGTCTTCTCCACCACGATAATCTTGTAAATTTGATCGGATACTGTTGTGATGGTGATCAGAGGATATTAGTGTACGAGTTTATGGCCAAAGGTTCCCTTGAAGACCACCTTCTTGAAATAGGACAGAAAAAACCACTAGATTGGAATACAAGGATGAAAATAGCAGAAGGGGCAGCTCGAGGACTCGAATACCTTCATGAAACAGCTGACCCTCCAGTGATATACCGAGATTTTAAAGCTTCAAACATACTATTAGATGAAAACTTCAACCCAAAACTTTCTGATTTTGGGCTAGCCAAGCTAGGTCCCACCGGTGACAAGTCGCACGTGTCAACCAGGGTGATGGGAACCTATGGGTATTGCGCCCCCGAGTATGCACTGACTGGGAAGTTGACAACAAAGTCAGATGTTTATAGCTTTGGTGTTGTGTTTTTGGAGTTGATCACCGGAAGGAGAGTCATCGACAATTCAAGACCAGAGAATGAGAAGAACCTAGTCACTTGGGCACAACCATTGTTCAAGGATAAGAGGAAGTTCCACTTAATGGCAGATCCATTACTTGAAGGGAACTACCCTACAAAGGGTCTGTACCAGGCTCTAGCAGTAGCAGCTATGTGTCTACAAGAGGAAGCTAGTACTCGCCCATTGATCAGCGATGTGGTAACCGCCCTCGAGTTTTTGTCTACAGGCAAGCTTCCTCCTGATGATGTTGAAGACTCTGGTGCACCTCAAGATACTGAAAAAAAGGAAGCTGATGGCGATTGA

Network for GWHGAAZE002827

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10536.10	PMD	86	445	2.00E-119
PF00069.26	Pkinase	674	940	2.90E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.153
	SRR3591706	second leaf	2.156
	SRR3591707	mature leaf	0.889
	SRR3591708	Shoot apex	2.067
	SRR3591709	Stem	1.001
	SRR3591710	White floral bud	55.378
	SRR3591711	White flower	5.327
	SRR3591712	Green floral bud	11.738
	SRR3591713	Yellow flower	4.709
SRP173429	SRR8316895	Juvenile bud stage	0.505
	SRR8316896	Juvenile bud stage	0.471
	SRR8316897	Juvenile bud stage	0.232
	SRR8316894	Third green stage	0.234
	SRR8316900	Third green stage	2.174
	SRR8316901	Third green stage	0.812
	SRR8316898	Complete white stage	0.853
	SRR8316899	Complete white stage	1.237
	SRR8316903	Complete white stage	1.787
	SRR8316902	Silver flowering stage	1.312
	SRR8316904	Silver flowering stage	1.990
	SRR8316905	Silver flowering stage	0.592
	SRR8316906	Gold flowering stage	1.505
	SRR8316907	Gold flowering stage	1.285
	SRR8316908	Gold flowering stage	0.760
SRP132670	SRR6706286	Control	2.384
	SRR6706287	Light intensity 50%	3.256
	SRR6706288	Light intensity 20%	2.388
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.688
	CNS0095593	Slightly white alabastrum(diploid) 2	0.921
	CNS0095594	Slightly white alabastrum(diploid) 3	1.033
	CNS0095595	Whole white alabastrum(diploid) 2	5.483
	CNS0095596	Whole white alabastrum(diploid) 3	3.587
	CNS0095597	Whole white alabastrum(diploid) 4	15.911
	CNS0095598	Silvery flower (diploied) 1	4.921
	CNS0095599	Silvery flower (diploied) 2	11.296
	CNS0095600	Silvery flower (diploied) 3	3.211
	CNS0095601	Golden flower (diploid) 1	5.080
	CNS0095602	Golden flower (diploid) 2	3.730
	CNS0095603	Golden flower (diploid) 3	3.911
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.375
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.447
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.359
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.361
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.203
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.275
	CNS0095610	Silvery flower (tetraploid) 1	2.676
	CNS0095611	Silvery flower (tetraploid) 2	8.525
	CNS0095612	Silvery flower (tetraploid) 3	18.549
	CNS0095613	Golden flower (tetraploid) 1	5.267
	CNS0095614	Golden flower (tetraploid) 2	1.718
	CNS0095615	Golden flower (tetraploid) 3	9.941
CRA001975	CRR073297	Stem 1	2.390
	CRR073298	Stem 2	1.417
	CRR073299	Stem 3	1.691
	CRR073300	Leaf 1	4.317
	CRR073301	Leaf 2	1.588
	CRR073302	Leaf 3	1.384
	CRR073303	Juvenile bud 1	16.023
	CRR073304	Juvenile bud 2	9.612
	CRR073305	Juvenile bud 3	1.391
	CRR073306	Third green 1	6.604
	CRR073307	Third green 2	8.752
	CRR073308	Third green 3	8.838
	CRR073309	Second white 1	0.655
	CRR073310	Second white 2	3.068
	CRR073311	Second white 3	2.447
	CRR073312	Silver flowering 1	5.861
	CRR073313	Silver flowering 2	8.289
	CRR073314	Silver flowering 3	4.966
	CRR073315	Gold flowering 1	7.043
	CRR073316	Gold flowering 2	4.085
	CRR073317	Gold flowering 3	1.626
	CRR073318	Tawny withering 1	9.620
	CRR073319	Tawny withering 2	10.545
	CRR073320	Tawny withering 3	7.199