Gene detail

Detail information of GWHGAAZE002831

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007020904.1	0	Cytochrome P450 [Theobroma cacao]
COG	YP_007055574.1	6E-61	cytochrome P450
Swissprot	tr\|Q9SZ42\|FAD4_ARATH	1E-116	Fatty acid desaturase 4, chloroplastic (Precursor)
trEMBL	tr\|A0A061FD55\|A0A061FD55_THECC	0	Cytochrome P450 {ECO:0000313\|EMBL:EOY12429.1}
TAIR10	AT4G27030.1	4E-98	fatty acid desaturase A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87053612	87058470	-
GWHAAZE00000001	mRNA	87053612	87058470	-
GWHAAZE00000001	exon	87058443	87058470	-
GWHAAZE00000001	exon	87058089	87058348	-
GWHAAZE00000001	exon	87056756	87057200	-
GWHAAZE00000001	exon	87055922	87056109	-
GWHAAZE00000001	exon	87055511	87055812	-
GWHAAZE00000001	exon	87053612	87054395	-
GWHAAZE00000001	CDS	87058443	87058470	-
GWHAAZE00000001	CDS	87058089	87058348	-
GWHAAZE00000001	CDS	87056756	87057200	-
GWHAAZE00000001	CDS	87055922	87056109	-
GWHAAZE00000001	CDS	87055511	87055812	-
GWHAAZE00000001	CDS	87053612	87054395	-

Transcript Sequence
>GWHTAAZE002835 ATGATTTGGGCTTCAGTGCTACTATTTGTCTTTATCTATGGACAGGCTGCCAATAAGTTTGTGTTCACAAGTGACAGCAGCACCATCACTAACCAGCAGCCTCAGTCAATTAAGATGATATTGGGCGATCGGTGTCTGCTCGAACTAGGCGGCGTAGATCATAAACGTGTTAGAGATGCTCTTGTGTCCTTCTTAAAGCCAGAGTGTTTAAAGCAGTATGTCGGAAAGATTGATGAAGAGGTCAGGAACCACCTTCAATTGCATTGGGAAGGGAAGCAGAAAGTTACTGTGCTGCCCTTGATGAAGACCCTCACATTCAACATAATTTGCTCTCTTTTAATTGGACTTGAACGTGGACCCCGGAGAGATGAATTCGTCAACTACTTCCAGGAAATGATAATGGGAATGTGGTCAGTCCCCATCAATTTGCCCTTCACACGGTACAACCGGAGCCTGAAGGCGAGTGTGAGGGTTCAAAAAATGTTGAAAGCCGTTATACGTGAGAAGAGAGGTGAACTTGAGCAGAAAGGTGCTGCTGCATCTCACCAAGACCTAGTCACCTGCCTGCTTAGCATGCGAAGCGAAGAGAACAAAAAAACGCTCACTGAAAATGAGATTGTGCACAATCTCATGCTTGTTATGGTAGCTGGACACGACACTTCGTCTGTGCTAATTACTTTTGTAATGCGACTTTTTGCTACCAATCAAACTGTACTTAAAGCTGTTCTTCGAGAACAAGAAGAGGTTGCAAAGAGCAAGCCCTCAGGAGAGTCCCTAACATGGGAAGATCTTGTAAAGATGAAGTACACATGGAGGGTTGTACTGGAGACCCTGAGAATGTTCCCTCCTATTTTTGGAGGCTTTAGGAACACATTGAAAGACATCGAATATAACGGCTACCTCATACCCAAAGGATGGCAAATATTTTGGGCTTCATTTATGACTCACATGGACGCTAAAATATTTGAAGATCCTTCTAAGTTTGATCCAAAGCGATTCGAGAACCAATCTTCTGTTCCTCCTTATTGCCTCGTTCCCTTTGGAGGGGGACCCAGAATATGTCCAGGGTACGAGTTTGCAAGGATTGAAACTTTGGTCACCATCCACTATTTGGTCACTCGATTAACGTGGGAGTTATGCTGCAAAGACAATTGTTTCAGCAGGGATCCAATGCCAACACCAACTGAAGGACTCCCAATCCAAATTCTCCCAAAAAACCAGCACCCTGTCACCGAGCCGCTACTCATCCAACCCCAGCTCCTAGTCACACCTGTGACCCGGCCTGTGCTAGATGACCAAATTTTGCAATCCAGCTGGTCTCACAAGGCATGGTTGACCACTGGGTGCACCACGGTCCTAGCCACTCTAGCAAACTCCATAACAAACACAACCAGCTCACAAATGTGGCTCGAGCCCATCTTAGCCAGCCTAGTCGGCTACGTGCTAGCCGACCTAGGCTCGGGTGTCTACCATTGGGCTATAGACAATTACGGTGACGCCTCAACCCCGATTTTTGGGTCCCAAATAGAGGCATTCCAAGGCCACCACAAGTGGCCTTGGACGATAACAAAGCGTGCATTTGCCAACAATCTACACGCGCTGGCTCGAGCCACGACTTTTGTGGTCCTTCCCATAGACCTCATTAGCCACGACTCAACCCTGCTTGGGTTCGTAGGGGTGTGCTCTGGCTGCATTATGTTTAGCCAGCAATTCCACGCGTGGGCCCACGGTACAAAAAGCAAGCTCCCCCCACTGGTGGTGGCACTGCAAGACTCTGGCATCCTCGTATCAAGATTGCAGCACTCGGCCCACCATAGGCCGCCGTATAATAATAATTACTGCATAGTCAGTGGAATATGGAATGAATTTTTGGACAAGAATAAGGTATTTGAGGCATTGGAGATGATCTTGTTCTTTAAGATTGGATTGCGGCCGCGGTCATGGACCGAGCCCAACTCTGAATGGATTGCAGAAACCGAAAACCCGGCTCAAATTGAGCTTCAGTGA

Network for GWHGAAZE002831

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	10	383	2.00E-61
PF10520.10	TMEM189_B_dmain	480	648	1.30E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	molecular_function	iron ion binding
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.506
	SRR3591706	second leaf	19.340
	SRR3591707	mature leaf	22.023
	SRR3591708	Shoot apex	12.691
	SRR3591709	Stem	7.931
	SRR3591710	White floral bud	11.222
	SRR3591711	White flower	31.382
	SRR3591712	Green floral bud	8.146
	SRR3591713	Yellow flower	22.254
SRP173429	SRR8316895	Juvenile bud stage	8.029
	SRR8316896	Juvenile bud stage	7.997
	SRR8316897	Juvenile bud stage	5.040
	SRR8316894	Third green stage	5.253
	SRR8316900	Third green stage	13.236
	SRR8316901	Third green stage	16.253
	SRR8316898	Complete white stage	14.148
	SRR8316899	Complete white stage	14.947
	SRR8316903	Complete white stage	22.279
	SRR8316902	Silver flowering stage	24.732
	SRR8316904	Silver flowering stage	26.236
	SRR8316905	Silver flowering stage	17.217
	SRR8316906	Gold flowering stage	37.031
	SRR8316907	Gold flowering stage	34.663
	SRR8316908	Gold flowering stage	37.371
SRP132670	SRR6706286	Control	17.894
	SRR6706287	Light intensity 50%	16.297
	SRR6706288	Light intensity 20%	14.052
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.305
	CNS0095593	Slightly white alabastrum(diploid) 2	11.741
	CNS0095594	Slightly white alabastrum(diploid) 3	9.252
	CNS0095595	Whole white alabastrum(diploid) 2	6.609
	CNS0095596	Whole white alabastrum(diploid) 3	6.338
	CNS0095597	Whole white alabastrum(diploid) 4	8.072
	CNS0095598	Silvery flower (diploied) 1	19.046
	CNS0095599	Silvery flower (diploied) 2	18.620
	CNS0095600	Silvery flower (diploied) 3	66.636
	CNS0095601	Golden flower (diploid) 1	22.327
	CNS0095602	Golden flower (diploid) 2	62.569
	CNS0095603	Golden flower (diploid) 3	55.535
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.289
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.260
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.045
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.039
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.223
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.223
	CNS0095610	Silvery flower (tetraploid) 1	49.739
	CNS0095611	Silvery flower (tetraploid) 2	52.162
	CNS0095612	Silvery flower (tetraploid) 3	16.711
	CNS0095613	Golden flower (tetraploid) 1	42.029
	CNS0095614	Golden flower (tetraploid) 2	42.368
	CNS0095615	Golden flower (tetraploid) 3	21.198
CRA001975	CRR073297	Stem 1	9.438
	CRR073298	Stem 2	9.418
	CRR073299	Stem 3	5.764
	CRR073300	Leaf 1	12.187
	CRR073301	Leaf 2	17.002
	CRR073302	Leaf 3	5.297
	CRR073303	Juvenile bud 1	11.047
	CRR073304	Juvenile bud 2	14.780
	CRR073305	Juvenile bud 3	16.371
	CRR073306	Third green 1	185.641
	CRR073307	Third green 2	131.945
	CRR073308	Third green 3	134.550
	CRR073309	Second white 1	168.087
	CRR073310	Second white 2	120.933
	CRR073311	Second white 3	96.719
	CRR073312	Silver flowering 1	96.421
	CRR073313	Silver flowering 2	127.766
	CRR073314	Silver flowering 3	96.117
	CRR073315	Gold flowering 1	35.004
	CRR073316	Gold flowering 2	33.197
	CRR073317	Gold flowering 3	31.849
	CRR073318	Tawny withering 1	9.442
	CRR073319	Tawny withering 2	11.275
	CRR073320	Tawny withering 3	5.064