Gene detail

Detail information of GWHGAAZE002847

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006452371.1	0	hypothetical protein CICLE_v10007983mg [Citrus clementina]
COG	YP_642814.1	1E-25	serine/threonine protein kinase
Swissprot	tr\|Q9C6P3\|CDPKX_ARATH	0	Calcium-dependent protein kinase 33
trEMBL	tr\|V4UST7\|V4UST7_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR65611.1}
TAIR10	AT1G50700.1	0	calcium-dependent protein kinase 33

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87270646	87274631	+
GWHAAZE00000001	mRNA	87270646	87274631	+
GWHAAZE00000001	exon	87270646	87271309	+
GWHAAZE00000001	exon	87272369	87272512	+
GWHAAZE00000001	exon	87272600	87272752	+
GWHAAZE00000001	exon	87273534	87273649	+
GWHAAZE00000001	exon	87273857	87274024	+
GWHAAZE00000001	exon	87274136	87274263	+
GWHAAZE00000001	exon	87274373	87274472	+
GWHAAZE00000001	exon	87274554	87274631	+
GWHAAZE00000001	CDS	87270646	87271309	+
GWHAAZE00000001	CDS	87272369	87272512	+
GWHAAZE00000001	CDS	87272600	87272752	+
GWHAAZE00000001	CDS	87273534	87273649	+
GWHAAZE00000001	CDS	87273857	87274024	+
GWHAAZE00000001	CDS	87274136	87274263	+
GWHAAZE00000001	CDS	87274373	87274472	+
GWHAAZE00000001	CDS	87274554	87274631	+

Transcript Sequence
>GWHTAAZE002851 ATGGGTTCTTGCCTAAGCAAGCGCAAATCATTCGGCACAATAGCAAATGACCATAAAACAGACCAAAGAAAATCACAAGACCCCCAAATTATTTACACAAAATCCCCTAACCCTGCCCCACAATTGCCCAAAAGCCCCAAAGGAGTCCACAGGTCGGATACAATTTTGGGCAAACCGTATGAAGATGTTAAGCAACACTACACCCTTGGTAAAGAATTGGGTAGGGGCCAATTCGGCGTAACATATCTATGTACCGAGATTTCGACCCGACAACAGTATGCTTGTAAGTCTATTTCCAAGAGGAAGCTTATTACCAAGAGTGATAAGGAGGATATGAAGAGGGAGATTCAGATAATGCAGCATTTGAGTGGGCAGGCTAATATTGTTGAGTTCAAGGGGGCTTATGAGGATAAGCAAACTGTGCACTTGGTGATGGAGTTGTGTGCTGGAGGGGAGCTTTTTGATAGGATCATAGCAAAGGGGCATTATAGTGAGAGAGCTGCAGCTTCTATTTGTAGGTCTATTGTTAATGTTGTGCATATCTGTCATTTTATGGGGGTGATGCATAGGGATCTCAAGCCCGAGAACTTTTTGTTGTCGGATAGGAGCGAGAATGCTCTTTTGAAGGCCACGGATTTCGGATTATCAGTGTTCATTGAAGAAGGGAAGGTGTATCGGGATATTGTTGGGAGTGCTTACTACGTTGCTCCTGAAGTGTTGCTCCGTAGATATGGGAAAGAGATCGATATATGGAGTGCAGGGATTATGTTGTACATCTTACTCAGTGGTGTACCCCCCTTCTGGGCTGAGGCGGAGAAGGGAATATTTGATGCCATATTGAAAGGAGATATTGACTTTGAAAGTCAACCTTGGCCATCTATATCAAATAGCGCTAAGGACCTGGTCCGCAAGATGCTTACGCAGGACCCAAAGAAGCGGATTACTTCCACTCAAGTTCTTGAGCACCCATGGATTCGAGAAGGTGGAGAAGCATCAGACAAGCCAATTGACAGTGCCGTGCTCTCTAGGATGAAGCAATTCAGAGCTATGAACAAGCTCAAGAAACTTGCACTCAAGGTTATTGCGGAAAACCTCTCGTCAGAAGAAATTCAAGGGCTGAAATCAATGTTCACAAACATGGACACTGACAACAGCGGTACAATAACTTATGAAGAACTTAAGACTGGATTGGCTCGACTTGGGTCAAAGCTCACTGAGGCTGAAGTTAAACAGCTTATGGAAGCCGCTGATGTGGATGGGAATGGGACAATTGACTACATCGAATTTATCACTGCTACTATGCATAGACACAAACTTGAAAGGGAGGAATATCTCTACAAAGCCTTTCAGCATTTCGATAAAGATAACAGCGGTTTTATTACGATGGATGAACTAGAATCAGCAATGAAAGAATACGGAATGGGCGATGAAGCCACAATCAAGGAAATAATATCTGAAGTCGACACAGATAATGATGGGAGAATAAATTATGAAGAATTCTGTGCGATGATGAGGAGTGGAACCCAACAACCAGCAGCCAAACTATTCTAG

Network for GWHGAAZE002847

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	67	325	1.30E-73
PF13499.7	EF-hand_7	373	433	5.80E-11
PF13499.7	EF-hand_7	443	505	1.40E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	63.542
	SRR3591706	second leaf	14.242
	SRR3591707	mature leaf	10.815
	SRR3591708	Shoot apex	26.510
	SRR3591709	Stem	32.721
	SRR3591710	White floral bud	32.501
	SRR3591711	White flower	31.143
	SRR3591712	Green floral bud	31.870
	SRR3591713	Yellow flower	21.496
SRP173429	SRR8316895	Juvenile bud stage	70.086
	SRR8316896	Juvenile bud stage	83.190
	SRR8316897	Juvenile bud stage	49.488
	SRR8316894	Third green stage	11.377
	SRR8316900	Third green stage	31.375
	SRR8316901	Third green stage	44.062
	SRR8316898	Complete white stage	11.719
	SRR8316899	Complete white stage	71.853
	SRR8316903	Complete white stage	19.011
	SRR8316902	Silver flowering stage	9.330
	SRR8316904	Silver flowering stage	14.490
	SRR8316905	Silver flowering stage	6.521
	SRR8316906	Gold flowering stage	26.683
	SRR8316907	Gold flowering stage	21.654
	SRR8316908	Gold flowering stage	23.942
SRP132670	SRR6706286	Control	34.083
	SRR6706287	Light intensity 50%	40.418
	SRR6706288	Light intensity 20%	39.747
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.127
	CNS0095593	Slightly white alabastrum(diploid) 2	42.554
	CNS0095594	Slightly white alabastrum(diploid) 3	37.668
	CNS0095595	Whole white alabastrum(diploid) 2	36.494
	CNS0095596	Whole white alabastrum(diploid) 3	10.408
	CNS0095597	Whole white alabastrum(diploid) 4	21.828
	CNS0095598	Silvery flower (diploied) 1	47.671
	CNS0095599	Silvery flower (diploied) 2	116.782
	CNS0095600	Silvery flower (diploied) 3	58.120
	CNS0095601	Golden flower (diploid) 1	164.511
	CNS0095602	Golden flower (diploid) 2	82.509
	CNS0095603	Golden flower (diploid) 3	83.695
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.779
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.606
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.211
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.113
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.965
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.102
	CNS0095610	Silvery flower (tetraploid) 1	24.749
	CNS0095611	Silvery flower (tetraploid) 2	27.582
	CNS0095612	Silvery flower (tetraploid) 3	21.227
	CNS0095613	Golden flower (tetraploid) 1	13.071
	CNS0095614	Golden flower (tetraploid) 2	20.047
	CNS0095615	Golden flower (tetraploid) 3	19.703
CRA001975	CRR073297	Stem 1	28.709
	CRR073298	Stem 2	25.585
	CRR073299	Stem 3	21.220
	CRR073300	Leaf 1	38.086
	CRR073301	Leaf 2	37.159
	CRR073302	Leaf 3	25.455
	CRR073303	Juvenile bud 1	29.451
	CRR073304	Juvenile bud 2	26.922
	CRR073305	Juvenile bud 3	30.427
	CRR073306	Third green 1	11.606
	CRR073307	Third green 2	9.990
	CRR073308	Third green 3	11.593
	CRR073309	Second white 1	14.241
	CRR073310	Second white 2	11.697
	CRR073311	Second white 3	11.600
	CRR073312	Silver flowering 1	17.052
	CRR073313	Silver flowering 2	12.975
	CRR073314	Silver flowering 3	15.577
	CRR073315	Gold flowering 1	9.726
	CRR073316	Gold flowering 2	22.868
	CRR073317	Gold flowering 3	10.606
	CRR073318	Tawny withering 1	32.511
	CRR073319	Tawny withering 2	43.781
	CRR073320	Tawny withering 3	39.649