Gene detail

Detail information of GWHGAAZE002862

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007049086.1	1.4239E-146	WRKY family transcription factor [Theobroma cacao]
Swissprot	tr\|Q9XEC3\|WRK42_ARATH	1E-125	Probable WRKY transcription factor 42
trEMBL	tr\|A0A061DTF6\|A0A061DTF6_THECC	5E-147	WRKY family transcription factor {ECO:0000313\|EMBL:EOX93243.1}
TAIR10	AT4G04450.1	4E-84	WRKY family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87659939	87664670	-
GWHAAZE00000001	mRNA	87659939	87664670	-
GWHAAZE00000001	exon	87659939	87660406	-
GWHAAZE00000001	exon	87661741	87661854	-
GWHAAZE00000001	exon	87662584	87663009	-
GWHAAZE00000001	exon	87663960	87664130	-
GWHAAZE00000001	exon	87664267	87664365	-
GWHAAZE00000001	exon	87664473	87664670	-
GWHAAZE00000001	CDS	87664473	87664670	-
GWHAAZE00000001	CDS	87664267	87664365	-
GWHAAZE00000001	CDS	87663960	87664130	-
GWHAAZE00000001	CDS	87662584	87663009	-
GWHAAZE00000001	CDS	87661741	87661854	-
GWHAAZE00000001	CDS	87659939	87660406	-

Transcript Sequence
>GWHTAAZE002866 ATGGTAGATCCACCACGCGATCAAAGAATCCTAAATTCTCTAGATGACCAAGTTTTCCCGGTGAAAAGGGTTCTTAATGAAATGGATTTCTTTGCTGACAAAAAAGGTAATTCGAATCATGCATTAACGAATAATGATGTCAAGAAAGAGATTCCCCGTGATGGAGTAGTGGCGCAACAATTCCAACTCAGCGTTAATACTGGTTTAAATCTGCTTACGACGAACACTGCGGTTAGTGATAAGTCAACAGTGGATGATGGTGCATCACCGGAAAGAGAGAAGAGAACTATTAATGAGGTGCGTTTGGGAGTTCTAAAGGGAGAGTTGGAGCGGATGAATGCAGAAAATGAACGTTTGAAAGCTATGCTGAATCAGTTGAACAACAAATACCATGCCTTGCAAATCCAAATTGTAACACTTGTGCGTCAACAACACGGCCGAAAATATGACACAACAGATGGTCTCAAGATGATACAAGAGGAGCTAGAAAAGAGAAAAGAAAGGGTCTTAGTTCCTAGACAATTCATGGATCTTGGCCAAGCTGCCATCTCAGATCATAAAGATGAACATTCGTTACATGAGTCTCGATCCGAGGACAGAATTCGGGATTGCTCTACTTCAGGATCACCTCGACACAAAGAAGAGGTGTCAAGGGCTTATGATCAGCAGCAACACATGAAGAATATTGCGAAAGTTGAAATTGATACAGTTGATGAGCAAATAATGCAAAGAAATAATATAAGAGAAGAGAGCCCGGACAAGGAATATCAAGAATGGCGTAGTCCTAACAAAGTCCCCAAGTTCCACTCTTCAAGTGAATTTGATCAACAAGCAGCAGAAGCTAGGATGAGGAAGGCTCGCGTCTCGGTTCGAGCAAGGTCTGAGGCATCGATGATTTCAGATGGATGCCAATGGAGAAAGTATGGACAGAAGATGGCGAAAGGAAACCCGTGCCCTCGAGCTTACTACCGATGCACCATGGCTGCTGGCTGTCCAGTTCGCAAACAAGTACAGAGGTGTGTAGAGGACCGAACGATCCTCGTAACAACGTACGAAGGCAATCACAACCATCCATTACCACCAGCCGCCATGACAATGGCATCAACAACCTCAGCAGCCGCCACAATGCTCCTCTCCGGCTCAATGTCTAGCTCTGATGGACTAATGAATAACTCTGGCGTACTCTCCAGAACAATGCTCCCATGTTCCTCAAATTTGGCCACCATATCAGCCTCGGCCCCATTTCCTACTGTTACATTGGACCTCACCAACCCCTCCCATTTACAAAGACCCCAATTTCAAGCCCCTTTTACGGGCCTAGGTCATGATAATAATCAGTCCAAGTTTATGCAAAGCTCTCAGGAAATTATGAGTGCAGCTGCTACGGCTGCAATTGCTGTGGATCCTAATTTTACTGCGGCTCTAGTTGCGGCCATTTCGTCTATTATTGGCAATAATACTCAGAATCCAAATTAG

Network for GWHGAAZE002862

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	301	358	4.70E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.173
	SRR3591706	second leaf	0.361
	SRR3591707	mature leaf	0.922
	SRR3591708	Shoot apex	0.178
	SRR3591709	Stem	0.875
	SRR3591710	White floral bud	1.504
	SRR3591711	White flower	1.219
	SRR3591712	Green floral bud	6.253
	SRR3591713	Yellow flower	1.183
SRP173429	SRR8316895	Juvenile bud stage	1.546
	SRR8316896	Juvenile bud stage	2.661
	SRR8316897	Juvenile bud stage	1.558
	SRR8316894	Third green stage	1.134
	SRR8316900	Third green stage	5.512
	SRR8316901	Third green stage	6.604
	SRR8316898	Complete white stage	0.253
	SRR8316899	Complete white stage	3.798
	SRR8316903	Complete white stage	0.418
	SRR8316902	Silver flowering stage	1.103
	SRR8316904	Silver flowering stage	0.839
	SRR8316905	Silver flowering stage	0.263
	SRR8316906	Gold flowering stage	4.360
	SRR8316907	Gold flowering stage	0.856
	SRR8316908	Gold flowering stage	6.486
SRP132670	SRR6706286	Control	3.868
	SRR6706287	Light intensity 50%	3.812
	SRR6706288	Light intensity 20%	2.574
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.367
	CNS0095593	Slightly white alabastrum(diploid) 2	2.570
	CNS0095594	Slightly white alabastrum(diploid) 3	4.162
	CNS0095595	Whole white alabastrum(diploid) 2	6.898
	CNS0095596	Whole white alabastrum(diploid) 3	8.648
	CNS0095597	Whole white alabastrum(diploid) 4	6.202
	CNS0095598	Silvery flower (diploied) 1	0.374
	CNS0095599	Silvery flower (diploied) 2	0.280
	CNS0095600	Silvery flower (diploied) 3	0.941
	CNS0095601	Golden flower (diploid) 1	0.620
	CNS0095602	Golden flower (diploid) 2	0.626
	CNS0095603	Golden flower (diploid) 3	0.804
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.704
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.561
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.191
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.619
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.387
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.498
	CNS0095610	Silvery flower (tetraploid) 1	0.192
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.630
	CNS0095613	Golden flower (tetraploid) 1	0.328
	CNS0095614	Golden flower (tetraploid) 2	0.824
	CNS0095615	Golden flower (tetraploid) 3	0.204
CRA001975	CRR073297	Stem 1	2.234
	CRR073298	Stem 2	1.940
	CRR073299	Stem 3	2.222
	CRR073300	Leaf 1	4.412
	CRR073301	Leaf 2	5.997
	CRR073302	Leaf 3	4.020
	CRR073303	Juvenile bud 1	3.049
	CRR073304	Juvenile bud 2	0.736
	CRR073305	Juvenile bud 3	0.412
	CRR073306	Third green 1	0.503
	CRR073307	Third green 2	0.192
	CRR073308	Third green 3	0.281
	CRR073309	Second white 1	0.094
	CRR073310	Second white 2	0.907
	CRR073311	Second white 3	0.067
	CRR073312	Silver flowering 1	1.363
	CRR073313	Silver flowering 2	0.318
	CRR073314	Silver flowering 3	0.034
	CRR073315	Gold flowering 1	0.391
	CRR073316	Gold flowering 2	0.943
	CRR073317	Gold flowering 3	2.873
	CRR073318	Tawny withering 1	14.990
	CRR073319	Tawny withering 2	14.988
	CRR073320	Tawny withering 3	1.742