Detail information of GWHGAAZE002873


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP13802.12.22008E-17unnamed protein product [Coffea canephora]
Swissprottr|Q9FKF0|RTL3_ARATH0.000001Ribonuclease 3-like protein 3
trEMBLtr|A0A068UZS4|A0A068UZS4_COFCA8E-18Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313|EMBL:CDP13802.1}
TAIR10AT5G45150.10.000002RNAse THREE-like protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8785153687852015+
GWHAAZE00000001mRNA8785153687852015+
GWHAAZE00000001exon8785153687851621+
GWHAAZE00000001exon8785184187852015+
GWHAAZE00000001CDS8785153687851621+
GWHAAZE00000001CDS8785184187852015+
Transcript Sequence

Network for GWHGAAZE002873

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0021


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00035.27dsrm27791.80E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf51.478
SRR3591706second leaf28.882
SRR3591707mature leaf20.574
SRR3591708Shoot apex47.169
SRR3591709Stem67.184
SRR3591710White floral bud38.147
SRR3591711White flower52.827
SRR3591712Green floral bud45.098
SRR3591713Yellow flower46.750
SRP173429 SRR8316895Juvenile bud stage 15.307
SRR8316896Juvenile bud stage 25.458
SRR8316897Juvenile bud stage 11.517
SRR8316894Third green stage 8.910
SRR8316900Third green stage 28.110
SRR8316901Third green stage 32.550
SRR8316898Complete white stage 17.575
SRR8316899Complete white stage 57.547
SRR8316903Complete white stage 24.565
SRR8316902Silver flowering stage20.680
SRR8316904Silver flowering stage21.174
SRR8316905Silver flowering stage10.854
SRR8316906Gold flowering stage 25.250
SRR8316907Gold flowering stage 30.412
SRR8316908Gold flowering stage 26.546
SRP132670SRR6706286Control14.932
SRR6706287Light intensity 50%14.515
SRR6706288Light intensity 20%15.902
CNP0000432CNS0095592Slightly white alabastrum(diploid) 150.683
CNS0095593Slightly white alabastrum(diploid) 249.778
CNS0095594Slightly white alabastrum(diploid) 354.879
CNS0095595Whole white alabastrum(diploid) 238.847
CNS0095596Whole white alabastrum(diploid) 341.914
CNS0095597Whole white alabastrum(diploid) 444.360
CNS0095598Silvery flower (diploied) 152.985
CNS0095599Silvery flower (diploied) 246.854
CNS0095600Silvery flower (diploied) 340.255
CNS0095601Golden flower (diploid) 156.630
CNS0095602Golden flower (diploid) 241.514
CNS0095603Golden flower (diploid) 343.015
CNS0095604Slightly white alabastrum(tetraploid) 147.912
CNS0095605Slightly white alabastrum(tetraploid) 242.811
CNS0095606Slightly white alabastrum(tetraploid) 378.363
CNS0095607Whole white alabastrum(tetraploid) 133.480
CNS0095608Whole white alabastrum(tetraploid) 233.233
CNS0095609Whole white alabastrum(tetraploid) 344.997
CNS0095610Silvery flower (tetraploid) 157.271
CNS0095611Silvery flower (tetraploid) 252.836
CNS0095612Silvery flower (tetraploid) 350.094
CNS0095613Golden flower (tetraploid) 148.196
CNS0095614Golden flower (tetraploid) 243.463
CNS0095615Golden flower (tetraploid) 327.083
CRA001975CRR073297Stem 113.235
CRR073298Stem 214.968
CRR073299Stem 317.104
CRR073300Leaf 115.740
CRR073301Leaf 215.868
CRR073302Leaf 310.525
CRR073303Juvenile bud 117.473
CRR073304Juvenile bud 211.414
CRR073305Juvenile bud 319.389
CRR073306Third green 113.776
CRR073307Third green 213.646
CRR073308Third green 316.482
CRR073309Second white 123.494
CRR073310Second white 215.532
CRR073311Second white 315.826
CRR073312Silver flowering 116.550
CRR073313Silver flowering 216.881
CRR073314Silver flowering 313.578
CRR073315Gold flowering 111.273
CRR073316Gold flowering 213.737
CRR073317Gold flowering 311.889
CRR073318Tawny withering 126.370
CRR073319Tawny withering 226.251
CRR073320Tawny withering 319.366