Gene detail

Detail information of GWHGAAZE002877

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277415.2	0	PREDICTED: aspartate carbamoyltransferase, chloroplastic [Vitis vinifera]
COG	YP_003320102.1	4E-117	aspartate carbamoyltransferase
Swissprot	tr\|Q43087\|PYRB2_PEA	0	Aspartate carbamoyltransferase 2, chloroplastic (Precursor)
trEMBL	tr\|F6HES7\|F6HES7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50689.1}
TAIR10	AT3G20330.1	8E-157	PYRIMIDINE B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87904036	87907019	+
GWHAAZE00000001	mRNA	87904036	87907019	+
GWHAAZE00000001	exon	87904036	87904600	+
GWHAAZE00000001	exon	87904675	87904814	+
GWHAAZE00000001	exon	87906133	87906306	+
GWHAAZE00000001	exon	87906565	87906801	+
GWHAAZE00000001	exon	87906912	87907019	+
GWHAAZE00000001	CDS	87904036	87904600	+
GWHAAZE00000001	CDS	87904675	87904814	+
GWHAAZE00000001	CDS	87906133	87906306	+
GWHAAZE00000001	CDS	87906565	87906801	+
GWHAAZE00000001	CDS	87906912	87907019	+

Transcript Sequence
>GWHTAAZE002881 ATGGCAACGGCTTCTTCCTCTTCATCAGCTTGTACCTTGCATAGGGCATCTCCTGCAACTAAAGCTCCGAGGGGCTACAATAGCCTGTTCAGGTGTAAATATTCGAATTTCTCTCTAAAACAATCAGCTCATACTAAGTCAATTTTTGCATCTGCCGACTCCTCACATTCATTGGCATTACTCAAGGATAAGTTAATACATTGGGAAGAAGGTGGACGATTTTTACCGAGAAATAGAATCCAATGCAGAGCATTGGAAACTGAAAAATCCCCTTTGTTTATGGAGGGGAATGGGTTTCAACTTGATGATGTGATTGAAGCTCAGCAATTTGATAGGGATATTCTTAGTGCTATATTTGAAGTTGCACGAGAGATGGAAAAGATTGAGAAAAAATCATCAGGTAGCCAAATTCTGAAAGGTTATTTAATGGCCACTCTTTTCTACGAGCCATCAACTAGAACTAGGCTTTCATTCGAGTCTGCTATGAAGCGTTTAGGTGGGGAAGTTTTGACCACAGAAAATGCACGCGAGTTCTCATCATCTGCAAAGGGAGAGACACTTGAAGATACAATAAGAACCGTTGAAGGGTACTCAGATATAATTGTGCTGAGGCACTTTGAAAGTGGAGCTGCCAGAAGAGCGGCAGCTACAGCCGGTATTCCAGTTATTAATGCTGGGGATGGTCCAGGACAACATCCAACTCAGGCCCTGCTAGATGTGTACACCATTGAAAGAGAGATAGGCAAACTGGATGGAATTAAAGTGGGACTTGTTGGAGATCTTGCTAATGGGAGGACAGTTCGTTCACTTGCATATCTGCTCTCCAAGTACCAGAATGTAAAGATTTACTTTGTTTCTCCTGAAGTTGTAAAAATGAAGGGGGACATAAAAGAGTTTTTGACATCAAAGGGAGTGGAATGGGAAGAAAGCGTTGATCTAATGGAAGTCGCTTCCAAATGCGACGTGGTCTATCAAACACGCATTCAGCGAGAACGATTTGGAGAGAGGACGGATCTGTATGAAGAAGCTCGAGGCAAATACATCATTGATAGGGATGTATTGGGTGTGATGCAGAAACATGCAGTGATCATGCATCCACTCCCCAGGCTTGACGAGATAACTGTGGATGTTGATGCGGATCCAAGGGCTGCATATTTCAGACAAGCAAAGAATGGGCTCTATATTCGGATGGCTCTGCTGAAGCTTCTACTTGTTGGTTGGTGA

Network for GWHGAAZE002877

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02729.22	OTCace_N	103	244	3.70E-44
PF00185.25	OTCace	251	402	1.10E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00609	pyrB, PYR2	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

GO term	Ontology	Name
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0006207	biological_process	'de novo' pyrimidine nucleobase biosynthetic process
GO:0016597	molecular_function	amino acid binding
GO:0016743	molecular_function	carboxyl- or carbamoyltransferase activity
GO:0004070	molecular_function	aspartate carbamoyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.744
	SRR3591706	second leaf	3.019
	SRR3591707	mature leaf	1.565
	SRR3591708	Shoot apex	10.663
	SRR3591709	Stem	4.034
	SRR3591710	White floral bud	7.475
	SRR3591711	White flower	10.088
	SRR3591712	Green floral bud	19.961
	SRR3591713	Yellow flower	6.214
SRP173429	SRR8316895	Juvenile bud stage	11.252
	SRR8316896	Juvenile bud stage	18.909
	SRR8316897	Juvenile bud stage	8.338
	SRR8316894	Third green stage	8.073
	SRR8316900	Third green stage	31.408
	SRR8316901	Third green stage	26.774
	SRR8316898	Complete white stage	2.025
	SRR8316899	Complete white stage	15.643
	SRR8316903	Complete white stage	2.720
	SRR8316902	Silver flowering stage	2.163
	SRR8316904	Silver flowering stage	1.320
	SRR8316905	Silver flowering stage	0.826
	SRR8316906	Gold flowering stage	1.050
	SRR8316907	Gold flowering stage	2.548
	SRR8316908	Gold flowering stage	3.606
SRP132670	SRR6706286	Control	25.229
	SRR6706287	Light intensity 50%	26.849
	SRR6706288	Light intensity 20%	29.451
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.769
	CNS0095593	Slightly white alabastrum(diploid) 2	24.493
	CNS0095594	Slightly white alabastrum(diploid) 3	15.454
	CNS0095595	Whole white alabastrum(diploid) 2	19.768
	CNS0095596	Whole white alabastrum(diploid) 3	27.014
	CNS0095597	Whole white alabastrum(diploid) 4	16.839
	CNS0095598	Silvery flower (diploied) 1	10.398
	CNS0095599	Silvery flower (diploied) 2	7.270
	CNS0095600	Silvery flower (diploied) 3	4.121
	CNS0095601	Golden flower (diploid) 1	5.171
	CNS0095602	Golden flower (diploid) 2	1.726
	CNS0095603	Golden flower (diploid) 3	3.181
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.584
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.846
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.307
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.610
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.391
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.611
	CNS0095610	Silvery flower (tetraploid) 1	4.571
	CNS0095611	Silvery flower (tetraploid) 2	3.902
	CNS0095612	Silvery flower (tetraploid) 3	5.045
	CNS0095613	Golden flower (tetraploid) 1	1.441
	CNS0095614	Golden flower (tetraploid) 2	2.632
	CNS0095615	Golden flower (tetraploid) 3	0.561
CRA001975	CRR073297	Stem 1	18.728
	CRR073298	Stem 2	17.436
	CRR073299	Stem 3	10.994
	CRR073300	Leaf 1	20.225
	CRR073301	Leaf 2	21.938
	CRR073302	Leaf 3	18.331
	CRR073303	Juvenile bud 1	23.216
	CRR073304	Juvenile bud 2	9.371
	CRR073305	Juvenile bud 3	12.345
	CRR073306	Third green 1	0.509
	CRR073307	Third green 2	0.782
	CRR073308	Third green 3	1.556
	CRR073309	Second white 1	1.158
	CRR073310	Second white 2	0.557
	CRR073311	Second white 3	1.008
	CRR073312	Silver flowering 1	0.312
	CRR073313	Silver flowering 2	0.639
	CRR073314	Silver flowering 3	0.489
	CRR073315	Gold flowering 1	5.071
	CRR073316	Gold flowering 2	8.797
	CRR073317	Gold flowering 3	2.826
	CRR073318	Tawny withering 1	9.500
	CRR073319	Tawny withering 2	5.204
	CRR073320	Tawny withering 3	9.983