Gene detail

Detail information of GWHGAAZE002878

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFU52656.1	0	beta-1,3-glucanase 23 [Solanum tuberosum]
Swissprot	tr\|Q9FJU9\|E1313_ARATH	7E-127	Glucan endo-1,3-beta-glucosidase 13 (Precursor)
trEMBL	tr\|M1AZ83\|M1AZ83_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400033480}
TAIR10	AT5G55180.2	3E-171	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87936263	87937666	+
GWHAAZE00000001	mRNA	87936263	87937666	+
GWHAAZE00000001	exon	87936263	87937313	+
GWHAAZE00000001	exon	87937350	87937666	+
GWHAAZE00000001	CDS	87936263	87937313	+
GWHAAZE00000001	CDS	87937350	87937666	+

Transcript Sequence
>GWHTAAZE002882 ATGGCCAACTTCCTTCTATTCCTCTCCCTCTTCTTCTCTCTGTCATCAAATATCCGATCCACATTCGCCGATTCCGGTTCCATCGGAGTGAACTACGGCCGCATCGCCAACAACCTCCCTGACCCATCCAAAGTAGTCCAACTCCTCAAATCCCAAGGCCTCACCCGTGTCAAGATCTTTGACACCGACCACTCCGTTCTCACCGCCTTCTCCGGCTCCGGCATCTCCCTCACCGTGGCACTTCCCAACGAGCTCCTCTCCTCTGCCGCCGCCAACCAATCATTCACTGACACGTGGGTGAAATCCAACATCCTACCTTTCCACCCTTCCACCATCTTCGAAGCCATTGCAGTTGGCAACGAAGTGTTCGCGGACCCCAAAAACACAACTAAGTTTCTGGTGGACGCAATGAAAAACGTTTACGCTTCTCTTTCGAATCTAAAAATTAATTCGTCCATCAAAATCTCCTCTCCCGTCGCTCTCAGTGCGCTTCAAACCTCGTACCCGTCCTCGTCCGGTTCGTTCAAGCAGGAACTGATCGAACCGGTGATTAAACCGATGCTAGATTTCCTCAAACAGACCGGTTCGTTCCTCATGGTAAATGTGTATCCCTTTTTCGCTTACTCTGCTAACACCGACACGATTTCGTTAGATTACGCTTTGTTTAAAGAAAACAAAGGCGTAACAGATCCTAACAACGGTTTAGTCTATAAAAGCCTATTCGAGGCCCAAATCGATGCCGTTTTTGTAGCAATGAAAGCTTTGAATTACGACGATATCAAAATGGTGGTATCTGAGACTGGTTGGCCGTCAAAAGGCGACGATAACGAAGTTGGTGCTAGTGCAGCCAACGCCGCTGATTATAATGGTAACCTCGTCCGTAGAGTGCTCGCCGGTAACGGAACGCCGTTAAGGCCTGACGATGCACTTAACGTCTTTCTGTTCGCTTTATTCAATGAGAATCAGAAAAACGGGCCCACCTCTGAGAGGAATTATGGTTTGTTTTATCCTAACGAGGATCGGGTTTATGATATACCGCTAACGAGGGAGGATGAGAGTAAGAGGCAGGTGAAGAGTCCGCCGGCCGGCGAAACGGCGGGGGACACCTGGTGCGTGGCGAATGGGGAGACTGGGGAGGAGAAGTTGCAAGCTGCGCTTGATTATGCGTGCGGGGAAGGAGGGGCTGATTGCCGTCCGATTCAGTCGGGTTCCACGTGTTTTGATCCGGATACACTTGTGGCCCACGCTTCGTATGCTTTCAATAGTTATTACCAGAAAAAGGCGCGTGGGACTGGGACGTGTGATTTTGGTGGTGCAGCTTATGTGGTTACTCAACCTCCTAGTACGTATACTAATTTTTATTTTTAA

Network for GWHGAAZE002878

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.19	Glyco_hydro_17	28	345	5.80E-92
PF07983.14	X8	369	440	1.40E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.588
	SRR3591706	second leaf	2.440
	SRR3591707	mature leaf	0.422
	SRR3591708	Shoot apex	62.988
	SRR3591709	Stem	16.139
	SRR3591710	White floral bud	5.835
	SRR3591711	White flower	0.527
	SRR3591712	Green floral bud	15.531
	SRR3591713	Yellow flower	0.267
SRP173429	SRR8316895	Juvenile bud stage	20.070
	SRR8316896	Juvenile bud stage	39.161
	SRR8316897	Juvenile bud stage	16.535
	SRR8316894	Third green stage	14.203
	SRR8316900	Third green stage	50.778
	SRR8316901	Third green stage	61.183
	SRR8316898	Complete white stage	0.369
	SRR8316899	Complete white stage	4.738
	SRR8316903	Complete white stage	1.587
	SRR8316902	Silver flowering stage	1.258
	SRR8316904	Silver flowering stage	2.010
	SRR8316905	Silver flowering stage	0.363
	SRR8316906	Gold flowering stage	0.212
	SRR8316907	Gold flowering stage	0.533
	SRR8316908	Gold flowering stage	3.532
SRP132670	SRR6706286	Control	26.187
	SRR6706287	Light intensity 50%	22.486
	SRR6706288	Light intensity 20%	19.164
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.600
	CNS0095593	Slightly white alabastrum(diploid) 2	31.621
	CNS0095594	Slightly white alabastrum(diploid) 3	60.554
	CNS0095595	Whole white alabastrum(diploid) 2	59.473
	CNS0095596	Whole white alabastrum(diploid) 3	70.635
	CNS0095597	Whole white alabastrum(diploid) 4	51.866
	CNS0095598	Silvery flower (diploied) 1	17.218
	CNS0095599	Silvery flower (diploied) 2	24.725
	CNS0095600	Silvery flower (diploied) 3	6.494
	CNS0095601	Golden flower (diploid) 1	6.311
	CNS0095602	Golden flower (diploid) 2	9.305
	CNS0095603	Golden flower (diploid) 3	9.357
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.680
	CNS0095605	Slightly white alabastrum(tetraploid) 2	63.177
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.870
	CNS0095607	Whole white alabastrum(tetraploid) 1	83.159
	CNS0095608	Whole white alabastrum(tetraploid) 2	69.949
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.571
	CNS0095610	Silvery flower (tetraploid) 1	0.921
	CNS0095611	Silvery flower (tetraploid) 2	2.347
	CNS0095612	Silvery flower (tetraploid) 3	7.661
	CNS0095613	Golden flower (tetraploid) 1	0.796
	CNS0095614	Golden flower (tetraploid) 2	0.388
	CNS0095615	Golden flower (tetraploid) 3	2.611
CRA001975	CRR073297	Stem 1	22.529
	CRR073298	Stem 2	25.570
	CRR073299	Stem 3	21.964
	CRR073300	Leaf 1	33.357
	CRR073301	Leaf 2	37.594
	CRR073302	Leaf 3	27.005
	CRR073303	Juvenile bud 1	20.226
	CRR073304	Juvenile bud 2	22.086
	CRR073305	Juvenile bud 3	3.197
	CRR073306	Third green 1	12.153
	CRR073307	Third green 2	20.151
	CRR073308	Third green 3	12.385
	CRR073309	Second white 1	3.027
	CRR073310	Second white 2	1.483
	CRR073311	Second white 3	2.010
	CRR073312	Silver flowering 1	11.756
	CRR073313	Silver flowering 2	20.379
	CRR073314	Silver flowering 3	7.848
	CRR073315	Gold flowering 1	7.532
	CRR073316	Gold flowering 2	4.189
	CRR073317	Gold flowering 3	9.679
	CRR073318	Tawny withering 1	165.025
	CRR073319	Tawny withering 2	74.543
	CRR073320	Tawny withering 3	202.874