Gene detail

Detail information of GWHGAAZE002886

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP20674.1	0	hypothetical protein JCGZ_21145 [Jatropha curcas]
COG	YP_004345481.1	5E-15	phosphatidate cytidylyltransferase
Swissprot	tr\|O04940\|CDS1_SOLTU	0	Phosphatidate cytidylyltransferase
trEMBL	tr\|A0A067JMG2\|A0A067JMG2_JATCU	0	Phosphatidate cytidylyltransferase {ECO:0000256\|RuleBase:RU003938}
TAIR10	AT4G22340.3	0	cytidinediphosphate diacylglycerol synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88076341	88079864	-
GWHAAZE00000001	mRNA	88076341	88079864	-
GWHAAZE00000001	exon	88076341	88076430	-
GWHAAZE00000001	exon	88076519	88076602	-
GWHAAZE00000001	exon	88076709	88076765	-
GWHAAZE00000001	exon	88076843	88076971	-
GWHAAZE00000001	exon	88077849	88077935	-
GWHAAZE00000001	exon	88078023	88078070	-
GWHAAZE00000001	exon	88078250	88078406	-
GWHAAZE00000001	exon	88078694	88078835	-
GWHAAZE00000001	exon	88079057	88079208	-
GWHAAZE00000001	exon	88079326	88079579	-
GWHAAZE00000001	exon	88079796	88079864	-
GWHAAZE00000001	CDS	88079796	88079864	-
GWHAAZE00000001	CDS	88079326	88079579	-
GWHAAZE00000001	CDS	88079057	88079208	-
GWHAAZE00000001	CDS	88078694	88078835	-
GWHAAZE00000001	CDS	88078250	88078406	-
GWHAAZE00000001	CDS	88078023	88078070	-
GWHAAZE00000001	CDS	88077849	88077935	-
GWHAAZE00000001	CDS	88076843	88076971	-
GWHAAZE00000001	CDS	88076709	88076765	-
GWHAAZE00000001	CDS	88076519	88076602	-
GWHAAZE00000001	CDS	88076341	88076430	-

Transcript Sequence
>GWHTAAZE002890 ATGCAAAAAATTCATAGCCCTACTTCTCCATCAACACCTCGAGTTCGGCATCGTAGGCGTTCTAATGAGGTCTTTCCTGATTTAGGCAAATTAAATGGAAATAATTTACTTCTCAATGATCATGACAAATACAAGTCGATGTGGGTCCGTGCGTATTCCTCTTTGTGGATGCTTTTGGGTTTGGCTGTCACACTCTATTTGGGTCATCTTTATATTTGGGCCATGATCGTCCTTATCCAGATACTTATGGTGACAGAGCTTTTCAATTTACTTAGAAGAGCACACGAAGATAGACGTCTTCCAGGATTTAGGCTCCTCAACTGGCACTTTTTCTTCACGGCTATGCTGTTTGTGTACGGACGCATTCTCAGTCAACAGCTTGTGAACACTGTAACTAACGATAAATTCTTCTATAAGCTTGTGAGCAGTGTTCTCAAGTATCAGATGGTTATCTGCTATTTCCTGTATATTGCAGGATTCATGTGGTTCATTCTTACGCTAAAGAAGAAGATGTATAAGTATCAATTTAGTCAATATGCGTGGACACATATGATTCTAATTGTGGTGTTCACCCAGTCCTCCTTCACTGTTGCAACTATTTTTGAAGGGATTTTCTGGTTTCTTCTCCCAGCTTCACTTATTGTTATCAATGACGTAGCTGCTTATTTCTTTGGTTTCTTCTTTGGGAAAACACCTTTGATCAAGCTCTCTCCAAAGAAGACATGGGAAGGTTTCATTGGAGCATCGGTTGCAACCATGATTTCAGCATTTGTGCTCGCAAACTTCCTAGGCTGTTTCCAGTGGTTGACATGTCCAAGGAAGGATTTATCAACCGGTTGGCTTCAATGCGATCCTGGACCACTTTTTAAGCCAGAATATTTTTCTTTACCTGGATGGGTTCCCCAGTGGTTTCCTTGGAAAGAGATATCAGTTTTGCCTGTGCAGTGGCATGCTCTGTGTTTTGGTTTATTTGCATCAATAATAGCACCTTTTGGAGGTTTTTTCGCTAGCGGTTTCAAGAGAGCTTTTAATATCAAGGATTTTGGCGATAGCATTCCTGGGCATGGGGGTTTTACTGATAGAATGGACTGCCAGATGGTGATGGCTGTTTTTGCCTACATATATCACCAATCATTTATACTTCCTCGAAACAACCCAGTTGAGATGATGTTGGATCAGATATTAAGGAGCCTAACTCTGGAGGAGCAGAAAACACTTTACATAATGCTTGAAGAGATATTGGAGGAGAGGCAGCTTGGGATGTTTTGA

Network for GWHGAAZE002886

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01148.21	CTP_transf_1	49	379	2.50E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00981	E2.7.7.41, CDS1, CDS2, cdsA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0016772	molecular_function	transferase activity, transferring phosphorus-containing groups
GO:0004605	molecular_function	phosphatidate cytidylyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.398
	SRR3591706	second leaf	0.214
	SRR3591707	mature leaf	0.445
	SRR3591708	Shoot apex	0.098
	SRR3591709	Stem	0.389
	SRR3591710	White floral bud	0.850
	SRR3591711	White flower	0.301
	SRR3591712	Green floral bud	18.227
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.399
	SRR8316896	Juvenile bud stage	9.793
	SRR8316897	Juvenile bud stage	4.653
	SRR8316894	Third green stage	4.025
	SRR8316900	Third green stage	11.448
	SRR8316901	Third green stage	13.317
	SRR8316898	Complete white stage	0.675
	SRR8316899	Complete white stage	1.846
	SRR8316903	Complete white stage	1.271
	SRR8316902	Silver flowering stage	0.175
	SRR8316904	Silver flowering stage	0.766
	SRR8316905	Silver flowering stage	0.134
	SRR8316906	Gold flowering stage	0.130
	SRR8316907	Gold flowering stage	0.251
	SRR8316908	Gold flowering stage	0.057
SRP132670	SRR6706286	Control	3.096
	SRR6706287	Light intensity 50%	2.875
	SRR6706288	Light intensity 20%	2.515
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.885
	CNS0095593	Slightly white alabastrum(diploid) 2	10.929
	CNS0095594	Slightly white alabastrum(diploid) 3	17.934
	CNS0095595	Whole white alabastrum(diploid) 2	18.222
	CNS0095596	Whole white alabastrum(diploid) 3	21.875
	CNS0095597	Whole white alabastrum(diploid) 4	15.466
	CNS0095598	Silvery flower (diploied) 1	8.227
	CNS0095599	Silvery flower (diploied) 2	7.468
	CNS0095600	Silvery flower (diploied) 3	2.481
	CNS0095601	Golden flower (diploid) 1	9.305
	CNS0095602	Golden flower (diploid) 2	5.982
	CNS0095603	Golden flower (diploid) 3	6.005
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.039
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.906
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.941
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.150
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.211
	CNS0095610	Silvery flower (tetraploid) 1	0.008
	CNS0095611	Silvery flower (tetraploid) 2	0.135
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.244
	CNS0095615	Golden flower (tetraploid) 3	0.027
CRA001975	CRR073297	Stem 1	0.673
	CRR073298	Stem 2	1.493
	CRR073299	Stem 3	0.954
	CRR073300	Leaf 1	3.318
	CRR073301	Leaf 2	3.793
	CRR073302	Leaf 3	3.377
	CRR073303	Juvenile bud 1	1.526
	CRR073304	Juvenile bud 2	0.445
	CRR073305	Juvenile bud 3	0.274
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.040
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.171
	CRR073313	Silver flowering 2	0.213
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.036
	CRR073316	Gold flowering 2	0.041
	CRR073317	Gold flowering 3	0.012
	CRR073318	Tawny withering 1	0.238
	CRR073319	Tawny withering 2	0.075
	CRR073320	Tawny withering 3	0.291