Gene detail

Detail information of GWHGAAZE002890

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009757734.1	0	PREDICTED: uncharacterized protein LOC104210518 isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|Q5PNS0\|Y3228_ARATH	3E-40	PHD finger protein At3g20280
trEMBL	tr\|A0A068UZE7\|A0A068UZE7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313\|EMBL:CDP13776.1}
TAIR10	AT1G50620.1	2E-75	RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88140159	88143812	-
GWHAAZE00000001	mRNA	88140159	88143812	-
GWHAAZE00000001	exon	88143381	88143812	-
GWHAAZE00000001	exon	88142486	88142858	-
GWHAAZE00000001	exon	88140588	88141523	-
GWHAAZE00000001	exon	88140159	88140523	-
GWHAAZE00000001	five_prime_UTR	88143792	88143812	-
GWHAAZE00000001	CDS	88143381	88143791	-
GWHAAZE00000001	CDS	88142486	88142858	-
GWHAAZE00000001	CDS	88140588	88141523	-
GWHAAZE00000001	CDS	88140159	88140523	-

Transcript Sequence
>GWHTAAZE002894 CATACATAGCATTCGTTCCAGATGGATCCGACGGCGGATATTCTATCTGCCGATCAAACCGAGGCGGGATCCAGTGAAAAGAGACCGGCGGAGGACGGTGAGTTAACCGTTCAGTCACCGAAGAAGGCTAGAAGAGAGGGAATACTGGCTAGGGATATGAAGAAAGTGGCGGAGATAGTGCTTGTGTTGGATACATTGGGGAAGATGAGAAGTGAGAGGAGTCCAACGGATGCAGAGAGGGAGATGATGGCGGAGGCTAGGGGGAAATTGGTGGAGTTGTGTCAAGAATTTGCTCCCAAGGATGTTTTTCCCAGGGAAGTGTTTGGGGGCATTATTGACGATCTTGGTCTCAGTAAACTAAGGGAGGAGAGACTAGGGTTTCGGCCTCCGAAGATGTCAATTGCCGAGAAATTGTTGCTCTCAAAGCGTAAGATGGAAAAATTGGTAGAATTTCCTCAGCATTCTGGTCCATGTTCATCTCCACAGACTCAAACAAAATTAGGTGCAGCAACCGAAAGCCACGTGATGTTGAATGCTGGTAGAAAGTTTCCATTAAACAGACCAAGTGGACCAATACCTTCAGGAGGCTTGCAAACGGCTTCCCCTTTAGGTCATGTTTCTACAGCAAAATCTACATCTCTGCCAAATCAGTTGCCCACCAGTGAAGTAAGACCTGTGATCTCCAGTGGATTGCCTGCCAGTCATATGGGAAGGGATTCTTCACTAGCATTGCCTAGAGTTGAGAGACCGCCTTTCAGATTGGATGGAAGATCAAATGGTTCTTCCTATACATCACAAGTTCAAGTGTCAGCAAATTCTTCTGGAGATCATAAAATGACAAAAACTCCAACTTGGTCTGTGCAACCTCAATCTGCCTCATTGGTGAAATATGGATCAGATCATAAGGTGACAGCTCAAACTTCTGCTAAGATTGAGGGAAGTGTGGCTACAAGTAGCACAAGCCAGCATTTACAGAAAGTGAAGCAAGGCCCTTCTCCCCGTAACAGCCACTTTGAAATTGGTAAAATTGTTAAGAAGTTACTACATCCACAGCTCCCAGTGCACCCTGAATGGACTCCCCCTTCGAGGGATTACATGAACAAGGCATTGACTTGTCAGACATGCAAGTTTTCTATTAATGAGGTAGGCACTGTACTTGTTTGTGATGGCTGTGAGAAAGGGTATCACTTAAAATGTCTCCAAAGTAACAATCTAAAGGCAATTCCTAGAGGTGAGTGGCATTGTGGAAAGTGTTTATTTTTAAACAATGGGAAACCAGTGCCCCCTAAATACGGTCGTGTAATGAGAAATATACCCACAACTAAAGTGTCTTCTGGCTCAACATCAACTCAGTCATCTTCGGAGAAGAAAGTAGGAACTTCAAATGACAAGGTCAATCAGCAGGGCATAACGGCAAAAGTGGGTACTTCAAATGAGAAGGTCAATCAGCAGGGCATAATAGCAAATGGAAACTCTGGTTTAAGAAATGCTGCTTCTGGTGCAATGGGAAATCACTACAGCCATTCCCCACCTGGTCTCATGATGTCAGATGTGAGTGAAATGCAAGGGAATATTTTATCTAGTGGGGCAAAAATGAATGACAAGCCTCCTGGAACTTGTCCAAATAACTTAATAAAAATCTCAGGATCTGCTGTGGTTTCTCCTGCCGACTCCTCATGTGAGGGATCACGTAAAGAGAAATTTGTTACTGAATCAAACTCACAGTCTCCAGCCAATCTGGGGCTACCCAAAAGTGTGAAAATTTCACCACAGCAGTGTCCTGTCGTGGACTGTCTGGTTGAGGAGACGGGGAAGTCTTTTAGTGGAGAAACTCTCAACTCTAATCCAAATCTTGAAGCTAAGGAGGATGAGCGAGGGTGTGCACAAACTAATCCTGTAGAAACTTCTGGAGCTTCTGTTAGGGCTACAGGGCAAGCTAGCTCTTCATCAGGTGGCTTGCATGATGTTGACTGGGCTGGTGATATAATTAACGTTGCAGATGAGAAAACCTATTACCAGTCTTGCTGCATCAGTGGAGTTGTATATAAAGTTCAGGACCATGCTCTTTTACTTCTTGACAACAAATTGCTGCCCTCCAAGCTTCAG

Network for GWHGAAZE002890

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.30	PHD	365	412	4.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.291
	SRR3591706	second leaf	2.445
	SRR3591707	mature leaf	1.510
	SRR3591708	Shoot apex	7.162
	SRR3591709	Stem	3.866
	SRR3591710	White floral bud	4.905
	SRR3591711	White flower	4.340
	SRR3591712	Green floral bud	4.519
	SRR3591713	Yellow flower	2.751
SRP173429	SRR8316895	Juvenile bud stage	2.241
	SRR8316896	Juvenile bud stage	4.121
	SRR8316897	Juvenile bud stage	1.331
	SRR8316894	Third green stage	1.577
	SRR8316900	Third green stage	3.700
	SRR8316901	Third green stage	3.707
	SRR8316898	Complete white stage	1.621
	SRR8316899	Complete white stage	4.278
	SRR8316903	Complete white stage	2.173
	SRR8316902	Silver flowering stage	1.137
	SRR8316904	Silver flowering stage	2.844
	SRR8316905	Silver flowering stage	1.180
	SRR8316906	Gold flowering stage	3.831
	SRR8316907	Gold flowering stage	2.411
	SRR8316908	Gold flowering stage	3.886
SRP132670	SRR6706286	Control	3.484
	SRR6706287	Light intensity 50%	3.284
	SRR6706288	Light intensity 20%	3.863
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.466
	CNS0095593	Slightly white alabastrum(diploid) 2	1.904
	CNS0095594	Slightly white alabastrum(diploid) 3	1.599
	CNS0095595	Whole white alabastrum(diploid) 2	3.178
	CNS0095596	Whole white alabastrum(diploid) 3	2.494
	CNS0095597	Whole white alabastrum(diploid) 4	3.314
	CNS0095598	Silvery flower (diploied) 1	3.050
	CNS0095599	Silvery flower (diploied) 2	2.673
	CNS0095600	Silvery flower (diploied) 3	3.453
	CNS0095601	Golden flower (diploid) 1	4.038
	CNS0095602	Golden flower (diploid) 2	5.183
	CNS0095603	Golden flower (diploid) 3	4.058
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.232
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.281
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.138
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.104
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.081
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.131
	CNS0095610	Silvery flower (tetraploid) 1	4.011
	CNS0095611	Silvery flower (tetraploid) 2	5.343
	CNS0095612	Silvery flower (tetraploid) 3	1.992
	CNS0095613	Golden flower (tetraploid) 1	1.396
	CNS0095614	Golden flower (tetraploid) 2	3.291
	CNS0095615	Golden flower (tetraploid) 3	2.944
CRA001975	CRR073297	Stem 1	3.236
	CRR073298	Stem 2	3.467
	CRR073299	Stem 3	2.800
	CRR073300	Leaf 1	4.306
	CRR073301	Leaf 2	3.397
	CRR073302	Leaf 3	2.617
	CRR073303	Juvenile bud 1	2.452
	CRR073304	Juvenile bud 2	1.147
	CRR073305	Juvenile bud 3	3.093
	CRR073306	Third green 1	0.696
	CRR073307	Third green 2	0.481
	CRR073308	Third green 3	0.713
	CRR073309	Second white 1	0.661
	CRR073310	Second white 2	0.576
	CRR073311	Second white 3	0.604
	CRR073312	Silver flowering 1	0.778
	CRR073313	Silver flowering 2	0.662
	CRR073314	Silver flowering 3	0.422
	CRR073315	Gold flowering 1	0.699
	CRR073316	Gold flowering 2	1.839
	CRR073317	Gold flowering 3	1.139
	CRR073318	Tawny withering 1	2.261
	CRR073319	Tawny withering 2	0.879
	CRR073320	Tawny withering 3	1.409