Gene detail

Detail information of GWHGAAZE002893

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097825.1	2.0344E-130	PREDICTED: syntaxin-51-like [Sesamum indicum]
Swissprot	tr\|Q94KK7\|SYP52_ARATH	8E-107	Syntaxin-52
trEMBL	tr\|I1M6L1\|I1M6L1_SOYBN	2E-125	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G02120.1}
TAIR10	AT1G79590.2	5E-76	syntaxin of plants 52

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88176199	88179304	+
GWHAAZE00000001	mRNA	88176199	88179304	+
GWHAAZE00000001	exon	88176199	88176416	+
GWHAAZE00000001	exon	88177592	88177749	+
GWHAAZE00000001	exon	88177914	88178014	+
GWHAAZE00000001	exon	88178382	88178426	+
GWHAAZE00000001	exon	88179173	88179304	+
GWHAAZE00000001	CDS	88176199	88176416	+
GWHAAZE00000001	CDS	88177592	88177749	+
GWHAAZE00000001	CDS	88177914	88178014	+
GWHAAZE00000001	CDS	88178382	88178426	+
GWHAAZE00000001	CDS	88179173	88179304	+

Transcript Sequence
>GWHTAAZE002897 ATGGCGTCCTCTGCAGATTCATGGATGAGAGAATATAACGAAGCAGTAAAACTTGCAGATGACATCTCTGGCATGATGTCTGAAAGGAGTTCTTTGCCTGCATCAGGACCAGAGGCACAGCGTCATTCATCTACCATACGAAGGAAAATTACAATATTAGGAACTAGACTTGACAGCTTACAGTCTCTTACACCCAAGCTTCCTGCAAAACAGCCCCTAACAGAGAAAGAGAAGAATCGCCGCAAGGACATGCTTGCAAATTTGAGAACAAAAGTAAATCAGATGGCCTCTACATTGAACATGTCAAACTTTGCAAACAGGGACAGCTTACTTGGACCAGATTCTAAGCCAGCTGATGCCATGAGCAGAACAACTGAGCAAGATGAGGGCTTGGATAAACTGGAGGAGACAGTGACAAGCACCAAGCATATTGCATTGGCGGTCAATGAGGAACTCGACCTACACACTAGACTTATTGATGACCTGGACCAACATACAGATGTTACCAACTCCCGATTACAGCGGGTGCAGAGGAACCTAGCTATTCTGAACAAACGAACCAAGGGTGGCTGCTCCTGCATGTACCTACTTTTATCAGTTATTGGCATTGTGATTCTGATTGTCGCCATATGGTTGCTGGTGAAATACTTGTGA

Network for GWHGAAZE002893

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05739.20	SNARE	158	208	3.10E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08503	SYP5	SNARE interactions in vesicular transport	map04130

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.241
	SRR3591706	second leaf	37.125
	SRR3591707	mature leaf	33.740
	SRR3591708	Shoot apex	45.453
	SRR3591709	Stem	67.874
	SRR3591710	White floral bud	67.569
	SRR3591711	White flower	68.139
	SRR3591712	Green floral bud	53.761
	SRR3591713	Yellow flower	65.373
SRP173429	SRR8316895	Juvenile bud stage	32.884
	SRR8316896	Juvenile bud stage	42.971
	SRR8316897	Juvenile bud stage	25.228
	SRR8316894	Third green stage	17.864
	SRR8316900	Third green stage	48.981
	SRR8316901	Third green stage	44.651
	SRR8316898	Complete white stage	30.222
	SRR8316899	Complete white stage	66.196
	SRR8316903	Complete white stage	45.345
	SRR8316902	Silver flowering stage	28.006
	SRR8316904	Silver flowering stage	37.296
	SRR8316905	Silver flowering stage	16.338
	SRR8316906	Gold flowering stage	53.037
	SRR8316907	Gold flowering stage	51.193
	SRR8316908	Gold flowering stage	60.019
SRP132670	SRR6706286	Control	65.815
	SRR6706287	Light intensity 50%	58.608
	SRR6706288	Light intensity 20%	58.166
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.116
	CNS0095593	Slightly white alabastrum(diploid) 2	37.108
	CNS0095594	Slightly white alabastrum(diploid) 3	40.134
	CNS0095595	Whole white alabastrum(diploid) 2	37.353
	CNS0095596	Whole white alabastrum(diploid) 3	33.275
	CNS0095597	Whole white alabastrum(diploid) 4	37.171
	CNS0095598	Silvery flower (diploied) 1	50.773
	CNS0095599	Silvery flower (diploied) 2	39.017
	CNS0095600	Silvery flower (diploied) 3	62.152
	CNS0095601	Golden flower (diploid) 1	39.300
	CNS0095602	Golden flower (diploid) 2	66.463
	CNS0095603	Golden flower (diploid) 3	63.316
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.511
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.364
	CNS0095606	Slightly white alabastrum(tetraploid) 3	50.079
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.300
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.928
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.283
	CNS0095610	Silvery flower (tetraploid) 1	57.491
	CNS0095611	Silvery flower (tetraploid) 2	68.848
	CNS0095612	Silvery flower (tetraploid) 3	95.245
	CNS0095613	Golden flower (tetraploid) 1	58.280
	CNS0095614	Golden flower (tetraploid) 2	70.790
	CNS0095615	Golden flower (tetraploid) 3	77.346
CRA001975	CRR073297	Stem 1	58.828
	CRR073298	Stem 2	48.801
	CRR073299	Stem 3	56.671
	CRR073300	Leaf 1	51.784
	CRR073301	Leaf 2	47.706
	CRR073302	Leaf 3	45.420
	CRR073303	Juvenile bud 1	47.952
	CRR073304	Juvenile bud 2	36.512
	CRR073305	Juvenile bud 3	42.447
	CRR073306	Third green 1	44.100
	CRR073307	Third green 2	59.497
	CRR073308	Third green 3	52.492
	CRR073309	Second white 1	52.111
	CRR073310	Second white 2	64.566
	CRR073311	Second white 3	49.819
	CRR073312	Silver flowering 1	43.843
	CRR073313	Silver flowering 2	44.164
	CRR073314	Silver flowering 3	48.910
	CRR073315	Gold flowering 1	34.279
	CRR073316	Gold flowering 2	36.378
	CRR073317	Gold flowering 3	28.934
	CRR073318	Tawny withering 1	56.492
	CRR073319	Tawny withering 2	58.353
	CRR073320	Tawny withering 3	54.143