Gene detail

Detail information of GWHGAAZE002904

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAZ68035.1	0	putative beta 1,2-xylosyltransferase [Nicotiana tabacum]
COG	YP_007118580.1	0.0000005	hypothetical protein Osc7112_5970
Swissprot	tr\|Q9LDH0\|XYLT_ARATH	0	Beta-(1,2)-xylosyltransferase
trEMBL	tr\|B8K1V8\|B8K1V8_TOBAC	0	Putative beta(1,2)-xylosyltransferase {ECO:0000313\|EMBL:ABA86987.1}
TAIR10	AT5G55500.1	1E-174	beta-1,2-xylosyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88369124	88372032	+
GWHAAZE00000001	mRNA	88369124	88372032	+
GWHAAZE00000001	exon	88369124	88369783	+
GWHAAZE00000001	exon	88370744	88370893	+
GWHAAZE00000001	exon	88371310	88372032	+
GWHAAZE00000001	CDS	88369124	88369783	+
GWHAAZE00000001	CDS	88370744	88370893	+
GWHAAZE00000001	CDS	88371310	88372032	+

Transcript Sequence
>GWHTAAZE002908 ATGAAGATGAACAGCAATACCCTCAAAGTCATAGTTTTGCTCTTCGTAATGAACTCCATCTCTATATCCATATACCTCTCTTTCCATCACGACTACTTCCGTCCTAAATCCCCACCGGAAAACTACATCTCTCTACCGGAACAACACAAAAACTTCCCCTCCATCACCTCCAACTCCAAACCGTGGCCAATCCTCCCTTCCTACCTCCCTTGGTCGCCGAACCCTAAATTACCCCTCGGATCCTGCGAGGCCTACTTCGGCAACGGATTCACTCGCCGAATCGACTTCCTCAAGTCCTCGCAGGAGACTCTCCGGGAATCTGCCGGAACCGGATGGTTCAGGTGCCTTTACAGTGGAACCCTACGGAGTTCGATATGTGAAGGAGGGAGGATTAGGATGCATCCGGAGAGGATTAAGATGGCGATCGGAGGAGAGAGACTAGAGGCGGTGATGGGGAGGGGAGAGGAGGAGGAGTTTCCGGTGTTTGAATTTGGAGCTTTTGATATTGAGGTAGGTGAGGGATTTAGTGGTGGAAGGAAACTTGCGAGTGGAGATTTGTTGGATCGGTGTGTGCCGGGGAATGGAATTGAGAGGCACACTATGCGAAGTTTGATTGATTCGATTCGAAAAGTTGGTACCAGTGAGTTCGAGTGCTCGGAGTGGGTTGAGGAGCCAGCACTTTTGATCACACGGTTTGAATATGCCAACCTATTTCACACAGTTACAGATTGGTACAGTGCATATGTGGCTTCCAGAGTTACTGGCTTGCCCAATCGACCCCATCTGATTTTTGTAGATGGCCATTGTACGGCATCCTTGGAAGAAATGTGGAAAGCAATGTTTTCAAGCCTTAGATATGCTAAACACTTTGAAGGACCTGTTTGTTTTCGCCATGCCATCCTCACACCTTTGGGGTATGAAACTGCCCTATTTAAGGGGCTGAGTGAGAGAATAGATTGTCGGGGTGCTCCTGCACATGAATTATGGGAAAAGCCCAATAATCAGAAAACTGCACGATTAGCTGAATTTGGCGAGATGATAAAAGCATCTTTTGATCTTCCATTGAATAGACGTAAGAAGTCAAAGGCGGTCTCAGGTCAAAATGTCCTCTTTATTCGACGTGAGGATTATTTAGCTCATCCGCGTCACAGCGGTAAGCCTGAATCGAGGCTTAGCAACGAACAAGAAGTTTTTGAGTCTTTAAAGAGTTGGGCATCAAAGCATGCGGAGTGCAAAGTCAACTTAGTCAACGGGTTATTTGCACACATGCCCCTGAAAGAGCAAGTCAGAGCCATTGAAGATGCGGCGGTCATTATTGGTGCCCATGGGGCAGGTCTCACTCACATAGTTTCGGCAACGCCTGATACAGTGATTTTAGAGATTGTAAGTAGTGCGTATAGACGCCCACATTTTCAACTTATTGCCCAGTGGAAAGGGTTGGAGTACCATGCAATATATCTACAGGGATCGCATGCCAAACCTGAAGTGGTTATTGATAACCTTAGCGGCATTTTGAGAAGTCTTGGATGTTGA

Network for GWHGAAZE002904

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04577.15	DUF563	237	487	1.50E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03714	XYLT	Metabolic pathways	map01100
K03714	XYLT	Various types of N-glycan biosynthesis	map00513

Gene Ontology

GO term	Ontology	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.056
	SRR3591706	second leaf	8.463
	SRR3591707	mature leaf	10.318
	SRR3591708	Shoot apex	18.165
	SRR3591709	Stem	25.247
	SRR3591710	White floral bud	15.691
	SRR3591711	White flower	19.701
	SRR3591712	Green floral bud	17.167
	SRR3591713	Yellow flower	16.038
SRP173429	SRR8316895	Juvenile bud stage	7.092
	SRR8316896	Juvenile bud stage	6.478
	SRR8316897	Juvenile bud stage	3.654
	SRR8316894	Third green stage	4.710
	SRR8316900	Third green stage	14.800
	SRR8316901	Third green stage	11.924
	SRR8316898	Complete white stage	9.275
	SRR8316899	Complete white stage	18.988
	SRR8316903	Complete white stage	12.325
	SRR8316902	Silver flowering stage	6.966
	SRR8316904	Silver flowering stage	11.426
	SRR8316905	Silver flowering stage	6.584
	SRR8316906	Gold flowering stage	15.142
	SRR8316907	Gold flowering stage	16.071
	SRR8316908	Gold flowering stage	14.736
SRP132670	SRR6706286	Control	16.046
	SRR6706287	Light intensity 50%	16.472
	SRR6706288	Light intensity 20%	16.926
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.031
	CNS0095593	Slightly white alabastrum(diploid) 2	9.817
	CNS0095594	Slightly white alabastrum(diploid) 3	8.852
	CNS0095595	Whole white alabastrum(diploid) 2	8.438
	CNS0095596	Whole white alabastrum(diploid) 3	10.011
	CNS0095597	Whole white alabastrum(diploid) 4	8.879
	CNS0095598	Silvery flower (diploied) 1	13.797
	CNS0095599	Silvery flower (diploied) 2	9.466
	CNS0095600	Silvery flower (diploied) 3	23.765
	CNS0095601	Golden flower (diploid) 1	9.217
	CNS0095602	Golden flower (diploid) 2	23.285
	CNS0095603	Golden flower (diploid) 3	20.480
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.273
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.958
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.067
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.788
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.440
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.433
	CNS0095610	Silvery flower (tetraploid) 1	21.985
	CNS0095611	Silvery flower (tetraploid) 2	21.928
	CNS0095612	Silvery flower (tetraploid) 3	23.740
	CNS0095613	Golden flower (tetraploid) 1	11.407
	CNS0095614	Golden flower (tetraploid) 2	21.783
	CNS0095615	Golden flower (tetraploid) 3	18.102
CRA001975	CRR073297	Stem 1	13.549
	CRR073298	Stem 2	14.082
	CRR073299	Stem 3	18.330
	CRR073300	Leaf 1	16.100
	CRR073301	Leaf 2	15.869
	CRR073302	Leaf 3	19.299
	CRR073303	Juvenile bud 1	20.372
	CRR073304	Juvenile bud 2	17.743
	CRR073305	Juvenile bud 3	22.553
	CRR073306	Third green 1	12.221
	CRR073307	Third green 2	12.646
	CRR073308	Third green 3	12.459
	CRR073309	Second white 1	16.654
	CRR073310	Second white 2	13.529
	CRR073311	Second white 3	12.178
	CRR073312	Silver flowering 1	13.065
	CRR073313	Silver flowering 2	16.459
	CRR073314	Silver flowering 3	11.668
	CRR073315	Gold flowering 1	8.501
	CRR073316	Gold flowering 2	8.895
	CRR073317	Gold flowering 3	10.747
	CRR073318	Tawny withering 1	15.622
	CRR073319	Tawny withering 2	15.229
	CRR073320	Tawny withering 3	22.742