Detail information of GWHGAAZE002925


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009592117.14.79554E-26PREDICTED: serine acetyltransferase 1, chloroplastic-like [Nicotiana tomentosiformis]
COGYP_004899542.12E-15serine acetyltransferase
Swissprottr|Q42588|SAT1_ARATH3E-23Serine acetyltransferase 1, chloroplastic
trEMBLtr|Q8H0P6|Q8H0P6_TOBAC2E-26Serine acetyltransferase 4 {ECO:0000313|EMBL:CAC88763.1} (Fragment)
TAIR10AT1G55920.11E-19serine acetyltransferase 2;1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8878196388782316-
GWHAAZE00000001mRNA8878196388782316-
GWHAAZE00000001exon8878196388782093-
GWHAAZE00000001exon8878217288782316-
GWHAAZE00000001CDS8878217288782316-
GWHAAZE00000001CDS8878196388782093-
Transcript Sequence

Network for GWHGAAZE002925

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00640cysE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Sulfur metabolismmap00920
Cysteine and methionine metabolismmap00270
Biofilm formation - Vibrio choleraemap05111

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.125
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.171
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.532
SRP173429 SRR8316895Juvenile bud stage 0.211
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.032
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.198
SRR8316902Silver flowering stage0.139
SRR8316904Silver flowering stage0.420
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.247
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 1.043
SRP132670SRR6706286Control0.273
SRR6706287Light intensity 50%0.000
SRR6706288Light intensity 20%0.083
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.061
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.027
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.326
CNS0095602Golden flower (diploid) 20.256
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.207
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.447
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.155
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.322
CNS0095614Golden flower (tetraploid) 20.095
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.000
CRR073299Stem 30.000
CRR073300Leaf 10.000
CRR073301Leaf 20.000
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.067
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.237
CRR073319Tawny withering 20.247
CRR073320Tawny withering 30.000