Gene detail

Detail information of GWHGAAZE002928

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008355312.1	0	PREDICTED: pectinesterase QRT1-like [Malus domestica]
COG	YP_003404589.1	8E-52	pectinesterase
Swissprot	tr\|Q9FM79\|PME62_ARATH	3E-153	Pectinesterase QRT1 (Precursor)
trEMBL	tr\|M5WPP1\|M5WPP1_PRUPE	5E-179	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT5G55590.1	4E-124	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88801998	88804345	+
GWHAAZE00000001	mRNA	88801998	88804345	+
GWHAAZE00000001	exon	88801998	88802311	+
GWHAAZE00000001	exon	88803224	88803419	+
GWHAAZE00000001	exon	88803540	88803743	+
GWHAAZE00000001	exon	88803843	88804078	+
GWHAAZE00000001	exon	88804198	88804345	+
GWHAAZE00000001	CDS	88801998	88802311	+
GWHAAZE00000001	CDS	88803224	88803419	+
GWHAAZE00000001	CDS	88803540	88803743	+
GWHAAZE00000001	CDS	88803843	88804078	+
GWHAAZE00000001	CDS	88804198	88804345	+

Transcript Sequence
>GWHTAAZE002932 ATGAATTTGAGGGTTTGGGCTGCTATGGTTTTCGGGGTATTTTTGTGCGGTGTTAAGGCCGGTTTTGCAAGGAATTATATAACGTGGGATGATATGAAGGTGGATGACCGACTTAAAGAGATTAGATTGGGATTGAGATTGAGAGATGATGATATCATTAATGATCATGACTACTTTAGTCGCAATCGGAGCCGGGTGATTGTGGTTGATCAAAATGGGAACGGTGATTCTTATACGGTGCAAGGGGCCGTCGATATGGTTCCTCTTAATAATTCTCAAAGAGTTAAGATTTGCATTCTTCCTGGGATTTACAGAGAAAAAGTTTTTGTCCCTGCCTCCAAGCCATATATCTCCTTCATTGGCAATCAAAACCAAACATCCGAAACTGTCATCACTTGGAACAACAAAGCCTCTGACATAGGTCCAGACGGCTTCGAATTAGGCACCTACAGATCAGCTTCTGTCACCATAGAATCCAATTACTTTTGCGCTAGCGCCATCACTTTCCAGAATTCGGTAGTTTCCGTGCCTGGAGGCTATGGAATGCAAGCAGTAGCACTGAGGATATCTGGTGACAAAGCCATGTTCTATGGAGTTAGGATTCTGGGTACACAGGACACGCTTTTAGATGACTCGGGTTCTCACTATTTTTACCGCTCTTACATTCAAGGATCTGTCGATTTCATATTCGGCCGATCAAGGTCACTCTACAGGGACTGTTATCTGCACTCAATAGCCGAAAGATTCGGAGCAATTGCAGCTCATCATAGGGATACGTTAGATGAGGATACGGGGTTCTCTTTTGTGAACTGCAAAATCACTGGAAGTGGGACTGTCTACTTGGGACGAGCTTGGGGGAATTATTCGCGAACAATTTATTCCTACTGTGACATCGACAATATTGTAACACCATCCGGATGGAGTGATTGGAACGAACCCTCTAGGCAAAAGACTGCAGTCTTCGGGGAATACCAGTGCAGAGGGAAAGGAGCGGATAGAAGGAATAGAGTGCCGTGGTCCAAGTCTTTCAGTTACAACGAAGTGAGGCCTTTCCTGGATGTGAAATTCATAGATGGACAGCAATGGCTGAGATTATAG

Network for GWHGAAZE002928

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	67	359	7.90E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.119
	SRR3591711	White flower	0.113
	SRR3591712	Green floral bud	0.071
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.479
	SRR8316896	Juvenile bud stage	0.373
	SRR8316897	Juvenile bud stage	0.439
	SRR8316894	Third green stage	0.172
	SRR8316900	Third green stage	0.663
	SRR8316901	Third green stage	0.409
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.094
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.048
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.045
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.443
	SRR6706287	Light intensity 50%	0.959
	SRR6706288	Light intensity 20%	0.830
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.706
	CNS0095593	Slightly white alabastrum(diploid) 2	0.477
	CNS0095594	Slightly white alabastrum(diploid) 3	0.970
	CNS0095595	Whole white alabastrum(diploid) 2	0.154
	CNS0095596	Whole white alabastrum(diploid) 3	0.411
	CNS0095597	Whole white alabastrum(diploid) 4	0.052
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.197
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.056
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.901
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.352
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.084
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.101
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.295
	CRR073298	Stem 2	0.487
	CRR073299	Stem 3	0.712
	CRR073300	Leaf 1	0.307
	CRR073301	Leaf 2	0.178
	CRR073302	Leaf 3	0.373
	CRR073303	Juvenile bud 1	0.741
	CRR073304	Juvenile bud 2	0.217
	CRR073305	Juvenile bud 3	0.698
	CRR073306	Third green 1	0.002
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.029
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.087
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000