Detail information of GWHGAAZE002949


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010644585.10PREDICTED: poly(A)-specific ribonuclease PARN [Vitis vinifera]
Swissprottr|Q9LG26|PARN_ARATH0Poly(A)-specific ribonuclease PARN
trEMBLtr|F6I563|F6I563_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB62018.1}
TAIR10AT1G55870.12E-178Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8908781889091704-
GWHAAZE00000001mRNA8908781889091704-
GWHAAZE00000001exon8909166489091704-
GWHAAZE00000001exon8909143089091588-
GWHAAZE00000001exon8909087389091176-
GWHAAZE00000001exon8909004889090161-
GWHAAZE00000001exon8908916289089288-
GWHAAZE00000001exon8908879889089068-
GWHAAZE00000001exon8908781889088616-
GWHAAZE00000001CDS8909166489091704-
GWHAAZE00000001CDS8909143089091588-
GWHAAZE00000001CDS8909087389091176-
GWHAAZE00000001CDS8909004889090161-
GWHAAZE00000001CDS8908916289089288-
GWHAAZE00000001CDS8908879889089068-
GWHAAZE00000001CDS8908781889088616-
Transcript Sequence

Network for GWHGAAZE002949

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0258


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04857.21CAF1143629.00E-53
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01148PARN, PNLDC1 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.015
SRR3591706second leaf11.152
SRR3591707mature leaf13.573
SRR3591708Shoot apex24.777
SRR3591709Stem28.431
SRR3591710White floral bud20.749
SRR3591711White flower21.035
SRR3591712Green floral bud24.663
SRR3591713Yellow flower13.509
SRP173429 SRR8316895Juvenile bud stage 27.528
SRR8316896Juvenile bud stage 32.774
SRR8316897Juvenile bud stage 20.477
SRR8316894Third green stage 16.971
SRR8316900Third green stage 48.587
SRR8316901Third green stage 39.812
SRR8316898Complete white stage 17.995
SRR8316899Complete white stage 65.837
SRR8316903Complete white stage 29.216
SRR8316902Silver flowering stage16.265
SRR8316904Silver flowering stage26.196
SRR8316905Silver flowering stage10.105
SRR8316906Gold flowering stage 29.945
SRR8316907Gold flowering stage 27.188
SRR8316908Gold flowering stage 31.678
SRP132670SRR6706286Control17.390
SRR6706287Light intensity 50%18.160
SRR6706288Light intensity 20%19.922
CNP0000432CNS0095592Slightly white alabastrum(diploid) 136.710
CNS0095593Slightly white alabastrum(diploid) 238.821
CNS0095594Slightly white alabastrum(diploid) 332.014
CNS0095595Whole white alabastrum(diploid) 229.575
CNS0095596Whole white alabastrum(diploid) 326.785
CNS0095597Whole white alabastrum(diploid) 425.540
CNS0095598Silvery flower (diploied) 147.675
CNS0095599Silvery flower (diploied) 233.204
CNS0095600Silvery flower (diploied) 342.601
CNS0095601Golden flower (diploid) 133.147
CNS0095602Golden flower (diploid) 238.825
CNS0095603Golden flower (diploid) 335.860
CNS0095604Slightly white alabastrum(tetraploid) 129.715
CNS0095605Slightly white alabastrum(tetraploid) 226.068
CNS0095606Slightly white alabastrum(tetraploid) 350.532
CNS0095607Whole white alabastrum(tetraploid) 120.347
CNS0095608Whole white alabastrum(tetraploid) 217.102
CNS0095609Whole white alabastrum(tetraploid) 335.758
CNS0095610Silvery flower (tetraploid) 136.479
CNS0095611Silvery flower (tetraploid) 234.468
CNS0095612Silvery flower (tetraploid) 327.288
CNS0095613Golden flower (tetraploid) 118.550
CNS0095614Golden flower (tetraploid) 227.047
CNS0095615Golden flower (tetraploid) 315.800
CRA001975CRR073297Stem 123.019
CRR073298Stem 219.201
CRR073299Stem 38.535
CRR073300Leaf 121.450
CRR073301Leaf 215.948
CRR073302Leaf 311.724
CRR073303Juvenile bud 111.818
CRR073304Juvenile bud 27.586
CRR073305Juvenile bud 310.357
CRR073306Third green 12.758
CRR073307Third green 22.184
CRR073308Third green 32.370
CRR073309Second white 13.379
CRR073310Second white 23.905
CRR073311Second white 33.497
CRR073312Silver flowering 13.762
CRR073313Silver flowering 22.185
CRR073314Silver flowering 31.999
CRR073315Gold flowering 111.053
CRR073316Gold flowering 221.620
CRR073317Gold flowering 35.004
CRR073318Tawny withering 111.854
CRR073319Tawny withering 215.553
CRR073320Tawny withering 311.398