Gene detail

Detail information of GWHGAAZE002973

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAY87903.1	0	farnesyl diphosphate synthase [Panax ginseng]
COG	YP_003668340.1	1E-20	Polyprenyl synthetase
Swissprot	tr\|P49351\|FPPS1_LUPAL	0	Farnesyl pyrophosphate synthase 1
trEMBL	tr\|Q4JHN6\|Q4JHN6_PANGI	0	Farnesyl diphosphate synthase {ECO:0000313\|EMBL:AAY87903.1}
TAIR10	AT5G47770.1	3E-163	farnesyl diphosphate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89433418	89438661	+
GWHAAZE00000001	mRNA	89433418	89438661	+
GWHAAZE00000001	exon	89433418	89433528	+
GWHAAZE00000001	exon	89435471	89435495	+
GWHAAZE00000001	exon	89435653	89435768	+
GWHAAZE00000001	exon	89435872	89435958	+
GWHAAZE00000001	exon	89436066	89436182	+
GWHAAZE00000001	exon	89436263	89436351	+
GWHAAZE00000001	exon	89436462	89436513	+
GWHAAZE00000001	exon	89437317	89437412	+
GWHAAZE00000001	exon	89437594	89437638	+
GWHAAZE00000001	exon	89437742	89437831	+
GWHAAZE00000001	exon	89437920	89437991	+
GWHAAZE00000001	exon	89438533	89438661	+
GWHAAZE00000001	CDS	89433418	89433528	+
GWHAAZE00000001	CDS	89435471	89435495	+
GWHAAZE00000001	CDS	89435653	89435768	+
GWHAAZE00000001	CDS	89435872	89435958	+
GWHAAZE00000001	CDS	89436066	89436182	+
GWHAAZE00000001	CDS	89436263	89436351	+
GWHAAZE00000001	CDS	89436462	89436513	+
GWHAAZE00000001	CDS	89437317	89437412	+
GWHAAZE00000001	CDS	89437594	89437638	+
GWHAAZE00000001	CDS	89437742	89437831	+
GWHAAZE00000001	CDS	89437920	89437991	+
GWHAAZE00000001	CDS	89438533	89438661	+

Transcript Sequence
>GWHTAAZE002977 ATGAGCGATTACAAGTCCAGATTTCTCGAGGTCTACTCCCTTCTTAAATCGGAGCTACTCAATGATCCAGCCTTCGAGTTCACCGATGATTCTCGTCAATGGATCGACAAGATGTTGGACTATAATGTACCTGGAGGAAAACTGAATCGAGGGCTTTCTGTTATCGACAGCTACAAATTGCTGAAAGAAGGAAAAGAAATAACCGATGATGAAGTTTTTCTCGCTTGTGCCCTTGGTTGGTGTATTGAATGGCTTCAAGCATATTTTCTTGTCCTTGATGATATTATGGATAACTCTCAGACACGCCGAGGTCAACCATGCTGGTACAAATTACCCAAGGTTGGTATGATTGCTGTAAATGATGGCGTACTACTCCGCAACCATATTCCTAGAATTCTTAAAAAGCATTTTCGATCAAAGCCTTATTATGTGGATTTGATTGATCTATTCAATGAGGTAGAATTTCAGACTGCATCTGGACAGATGATTGATTTGATCACCACACTGGTAGGAGAGAAAGATTTGTCAAAGTACTCATTGTCTATTCACCGTCGGATTGTTCAGTACAAGACTGCTTATTACTCATTTTATCTCCCAGTGGCCTGTGCACTTCTTATGATAGGCGAAAATCTGGATAATCATGTCAATGTGAAGGACATACTTATTGAAATGGGAACCTATTTTCAAGTCCAGGACGATTACCTGGATTGTTTTGGTGCACCTGAGGTTATTGGCAAGATTGGAACAGATATTGAAGATTTTAAGTGCTCCTGGTTGGTTGTGAAAGCCCTGGAACTTTCCAACGAGGACCAAAAGAAATTCTTATATGAGAACTACGGAAAAGAGGATCCAACCTCTGTAGCAAAAGTCAAGGAACTTTACAAAACTCTTAAGCTTGAGGATGTATTTGCAGAATATGAGAGCAAGAGTTACAAGAAATTAATAAACTTCATTGAAGCGCATCCAAGCAATGCCGTACAAGAGGTGTTGAAGTCATTCTTGGGCAAAATATACAAGAGGCAGAAGTAG

Network for GWHGAAZE002973

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00348.18	polyprenyl_synt	33	296	5.90E-90

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00787	FDPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	142.583
	SRR3591706	second leaf	75.753
	SRR3591707	mature leaf	16.914
	SRR3591708	Shoot apex	105.856
	SRR3591709	Stem	119.894
	SRR3591710	White floral bud	234.149
	SRR3591711	White flower	298.721
	SRR3591712	Green floral bud	106.239
	SRR3591713	Yellow flower	259.764
SRP173429	SRR8316895	Juvenile bud stage	51.491
	SRR8316896	Juvenile bud stage	64.408
	SRR8316897	Juvenile bud stage	37.582
	SRR8316894	Third green stage	34.532
	SRR8316900	Third green stage	102.194
	SRR8316901	Third green stage	88.685
	SRR8316898	Complete white stage	54.527
	SRR8316899	Complete white stage	103.534
	SRR8316903	Complete white stage	74.040
	SRR8316902	Silver flowering stage	196.743
	SRR8316904	Silver flowering stage	308.065
	SRR8316905	Silver flowering stage	144.220
	SRR8316906	Gold flowering stage	591.043
	SRR8316907	Gold flowering stage	544.734
	SRR8316908	Gold flowering stage	674.993
SRP132670	SRR6706286	Control	30.000
	SRR6706287	Light intensity 50%	30.981
	SRR6706288	Light intensity 20%	34.903
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	65.134
	CNS0095593	Slightly white alabastrum(diploid) 2	77.384
	CNS0095594	Slightly white alabastrum(diploid) 3	54.070
	CNS0095595	Whole white alabastrum(diploid) 2	68.417
	CNS0095596	Whole white alabastrum(diploid) 3	74.062
	CNS0095597	Whole white alabastrum(diploid) 4	61.569
	CNS0095598	Silvery flower (diploied) 1	37.659
	CNS0095599	Silvery flower (diploied) 2	36.324
	CNS0095600	Silvery flower (diploied) 3	73.613
	CNS0095601	Golden flower (diploid) 1	25.946
	CNS0095602	Golden flower (diploid) 2	45.365
	CNS0095603	Golden flower (diploid) 3	44.529
	CNS0095604	Slightly white alabastrum(tetraploid) 1	80.245
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.595
	CNS0095606	Slightly white alabastrum(tetraploid) 3	110.978
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.131
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.193
	CNS0095609	Whole white alabastrum(tetraploid) 3	88.976
	CNS0095610	Silvery flower (tetraploid) 1	66.805
	CNS0095611	Silvery flower (tetraploid) 2	45.542
	CNS0095612	Silvery flower (tetraploid) 3	281.257
	CNS0095613	Golden flower (tetraploid) 1	47.893
	CNS0095614	Golden flower (tetraploid) 2	59.425
	CNS0095615	Golden flower (tetraploid) 3	36.765
CRA001975	CRR073297	Stem 1	22.653
	CRR073298	Stem 2	21.332
	CRR073299	Stem 3	17.314
	CRR073300	Leaf 1	25.444
	CRR073301	Leaf 2	21.534
	CRR073302	Leaf 3	25.533
	CRR073303	Juvenile bud 1	22.074
	CRR073304	Juvenile bud 2	24.707
	CRR073305	Juvenile bud 3	15.886
	CRR073306	Third green 1	156.634
	CRR073307	Third green 2	150.665
	CRR073308	Third green 3	129.246
	CRR073309	Second white 1	225.880
	CRR073310	Second white 2	219.092
	CRR073311	Second white 3	185.321
	CRR073312	Silver flowering 1	147.601
	CRR073313	Silver flowering 2	133.437
	CRR073314	Silver flowering 3	132.695
	CRR073315	Gold flowering 1	5.307
	CRR073316	Gold flowering 2	2.667
	CRR073317	Gold flowering 3	3.300
	CRR073318	Tawny withering 1	24.272
	CRR073319	Tawny withering 2	22.231
	CRR073320	Tawny withering 3	25.425